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Equivalence class NR_3.5_10255.33 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17O7Y|1|B7 (rep)5S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)Electron microscopy2.22021-06-02
27OYD|1|K5S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1bElectron microscopy2.32022-07-20
37O7Z|1|B75S ribosomal RNA5SOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)Electron microscopy2.42021-06-02
48B6C|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147Electron microscopy2.792023-02-22
57UCK|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF0000180S translation initiation complex with ac4c(-1) mRNA and HarringtonineElectron microscopy2.82022-06-01
68BPO|1|B15S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)Electron microscopy2.82023-07-05
77OBR|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001RNC-SRP early complexElectron microscopy2.82021-07-21
87QWQ|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Ternary complex of ribosome nascent chain with SRP and NACElectron microscopy2.832022-03-16
97ZJW|1|L75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome as it decodes the Sec-UGA codonElectron microscopy2.82022-10-19
108B5L|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complexElectron microscopy2.862023-03-01
116SGC|1|745S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome stalled on a poly(A) tailElectron microscopy2.82019-12-04
127QWR|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NACElectron microscopy2.92022-03-09
138P2K|1|B75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Ternary complex of translating ribosome, NAC and METAP1Electron microscopy2.92023-07-19
147O80|1|B75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteElectron microscopy2.92021-06-02
157TOR|1|A5S5S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20Electron microscopy2.92022-05-25
166R5Q|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of XBP1u-paused ribosome nascent chain complex (post-state)Electron microscopy32019-07-10
177UCJ|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Mammalian 80S translation initiation complex with mRNA and HarringtonineElectron microscopy3.12022-06-01
186R6P|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of XBP1u-paused ribosome nascent chain complex (rotated state)Electron microscopy3.12019-07-10
197NWI|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin SElectron microscopy3.132021-07-07
208BHF|1|B25S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4Electron microscopy3.12023-09-06
217ZJX|1|L75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome programmed with SECIS and SBP2Electron microscopy3.12022-09-07
226P5K|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)Electron microscopy3.12019-09-18
237O81|1|B75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknotElectron microscopy3.12021-06-02
247TOQ|1|A5S5S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PRElectron microscopy3.12022-05-25
256P5J|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)Electron microscopy3.12019-09-18
266P5I|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)Electron microscopy3.12019-09-18
276T59|1|745S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexElectron microscopy3.112019-11-27
287NFX|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state AElectron microscopy3.22021-06-02
296P5N|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1Electron microscopy3.22019-09-25
307MDZ|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF0000180S rabbit ribosome stalled with benzamide-CHXElectron microscopy3.22021-09-01
317TM3|1|u5S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass transloconElectron microscopy3.252022-10-19
326D9J|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.Electron microscopy3.22018-06-06
335LZS|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BElectron microscopy3.312016-11-30
345LZV|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.Electron microscopy3.352016-11-30
356MTD|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)Electron microscopy3.32018-11-21
367QWS|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of ribosome translating beta-tubulin in complex with TTC5 and NACElectron microscopy3.42022-03-09
376ZVK|1|d25S ribosomal RNA5S RIBOSOMAL RNAOryctolagus cuniculusEukaryaRF00001The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanismElectron microscopy3.492020-12-23
386MTE|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)Electron microscopy3.42018-11-21
395LZZ|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)Electron microscopy3.472016-11-30
406MTC|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)Electron microscopy3.42018-11-21
418BTK|1|B75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of the TRAP complex with the Sec translocon and a translating ribosomeElectron microscopy3.52023-05-24
426D90|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.Electron microscopy3.22018-06-06
436GZ5|1|A45S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)Electron microscopy3.52018-12-05
443JAH|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonElectron microscopy3.452015-08-12

Release history

Release3.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.314
Date2023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-20

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_10255.33NR_3.5_10255.323.299(43) 7O7Y|1|B7, 7NWI|1|7, 7NFX|1|7, 7MDZ|1|7, 6ZVK|1|d2, 6T59|1|74, 6SGC|1|74, 6R6P|1|7, 6R5Q|1|7, 6P5N|1|7, 6P5K|1|7, 6P5J|1|7, 8P2K|1|B7, 6P5I|1|7, 8BTK|1|B7, 6MTE|1|7, 8BPO|1|B1, 6MTD|1|7, 8B6C|1|7, 6MTC|1|7, 8B5L|1|7, 6GZ5|1|A4, 7ZJX|1|L7, 6D9J|1|7, 7ZJW|1|L7, 6D90|1|7, 7UCK|1|7, 5LZZ|1|7, 7UCJ|1|7, 5LZV|1|7, 7TOR|1|A5S, 5LZS|1|7, 7TOQ|1|A5S, 3JAH|1|7, 7TM3|1|u, 7QWS|1|7, 7QWR|1|7, 7QWQ|1|7, 7OYD|1|K, 7OBR|1|7, 7O81|1|B7, 7O80|1|B7, 7O7Z|1|B7(1) 8BHF|1|B2(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16ZVK|1|d2The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanismELECTRON MICROSCOPY3.49120
26GZ5|1|A4tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.5119
37QWS|1|7Structure of ribosome translating beta-tubulin in complex with TTC5 and NACELECTRON MICROSCOPY3.4120
47QWR|1|7Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NACELECTRON MICROSCOPY2.9120
57QWQ|1|7Ternary complex of ribosome nascent chain with SRP and NACELECTRON MICROSCOPY2.83120
67OBR|1|7RNC-SRP early complexELECTRON MICROSCOPY2.8120
77NFX|1|7Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state AELECTRON MICROSCOPY3.2120
87TOR|1|A5SMammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20ELECTRON MICROSCOPY2.9120
97TOQ|1|A5SMammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PRELECTRON MICROSCOPY3.1120
106R6P|1|7Structure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.1120
116R5Q|1|7Structure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY3120
127MDZ|1|780S rabbit ribosome stalled with benzamide-CHXELECTRON MICROSCOPY3.2119
136MTC|1|7Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.4120
146MTD|1|7Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.3120
156MTE|1|7Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.4120
167TM3|1|uStructure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass transloconELECTRON MICROSCOPY3.25120
178BPO|1|B1Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)ELECTRON MICROSCOPY2.8120
186T59|1|74Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexELECTRON MICROSCOPY3.11120
195LZV|1|7Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.35120
205LZZ|1|7Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.47120
215LZS|1|7Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.31119
223JAH|1|7Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.45120
238BHF|1|B2Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4ELECTRON MICROSCOPY3.1119
246P5J|1|7Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.1119
256P5K|1|7Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)ELECTRON MICROSCOPY3.1119
266P5I|1|7Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.1119
277ZJX|1|L7Rabbit 80S ribosome programmed with SECIS and SBP2ELECTRON MICROSCOPY3.1119
287O81|1|B7Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknotELECTRON MICROSCOPY3.1119
297O80|1|B7Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteELECTRON MICROSCOPY2.9119
308BTK|1|B7Structure of the TRAP complex with the Sec translocon and a translating ribosomeELECTRON MICROSCOPY3.5119
318P2K|1|B7Ternary complex of translating ribosome, NAC and METAP1ELECTRON MICROSCOPY2.9119
327O7Y|1|B7Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)ELECTRON MICROSCOPY2.2119
337O7Z|1|B7Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)ELECTRON MICROSCOPY2.4119
346SGC|1|74Rabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.8119
357ZJW|1|L7Rabbit 80S ribosome as it decodes the Sec-UGA codonELECTRON MICROSCOPY2.8119
367OYD|1|KCryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1bELECTRON MICROSCOPY2.3119
378B6C|1|7Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147ELECTRON MICROSCOPY2.79120
388B5L|1|7Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complexELECTRON MICROSCOPY2.86120
397UCK|1|780S translation initiation complex with ac4c(-1) mRNA and HarringtonineELECTRON MICROSCOPY2.8120
407UCJ|1|7Mammalian 80S translation initiation complex with mRNA and HarringtonineELECTRON MICROSCOPY3.1120
416P5N|1|7Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1ELECTRON MICROSCOPY3.2119
426D90|1|7Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.2119
437NWI|1|7Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin SELECTRON MICROSCOPY3.13120
446D9J|1|7Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.2119
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