Equivalence class NR_3.5_10255.6 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6D9J|1|7 (rep) | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | Electron microscopy | 3.2 | 2018-06-06 |
| 2 | 5LZS|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | Electron microscopy | 3.31 | 2016-11-30 |
| 3 | 5LZV|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | Electron microscopy | 3.35 | 2016-11-30 |
| 4 | 1VWW|1|7 | 5S ribosomal RNA | Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA. | Electron microscopy | 3.4 | 2014-06-18 | ||||
| 5 | 1VWY|1|7 | 5S ribosomal RNA | Structure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA. | Electron microscopy | 3.4 | 2014-06-18 | ||||
| 6 | 3J72|1|7 | 5S ribosomal RNA | Structure of the idle mammalian ribosome-Sec61 complex | Electron microscopy | 3.4 | 2014-06-18 | ||||
| 7 | 3J71|1|7 | 5S ribosomal RNA | Structure of the mammalian 60S ribosomal subunit | Electron microscopy | 3.4 | 2014-06-18 | ||||
| 8 | 1VX3|1|7 | 5S ribosomal RNA | Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA. | Electron microscopy | 3.5 | 2014-06-18 | ||||
| 9 | 3J74|1|7 | 5S ribosomal RNA | Structure of the 80S mammalian ribosome bound to eEF2 | Electron microscopy | 3.5 | 2014-06-18 | ||||
| 10 | 5LZZ|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | Electron microscopy | 3.47 | 2016-11-30 |
| 11 | 6D90|1|7 | 5S ribosomal RNA | 5S rRNA | Oryctolagus cuniculus | Eukarya | RF00001 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | Electron microscopy | 3.2 | 2018-06-06 |
| 12 | 3JAH|1|7 | 5S ribosomal RNA | 5S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | Electron microscopy | 3.45 | 2015-08-12 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6D9J|1|7 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 119 |
| 2 | 3J74|1|7 | Structure of the 80S mammalian ribosome bound to eEF2 | ELECTRON MICROSCOPY | 3.5 | 120 |
| 3 | 1VX3|1|7 | Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA. | ELECTRON MICROSCOPY | 3.5 | 120 |
| 4 | 1VWW|1|7 | Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA. | ELECTRON MICROSCOPY | 3.4 | 120 |
| 5 | 3J71|1|7 | Structure of the mammalian 60S ribosomal subunit | ELECTRON MICROSCOPY | 3.4 | 120 |
| 6 | 1VWY|1|7 | Structure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA. | ELECTRON MICROSCOPY | 3.4 | 120 |
| 7 | 3J72|1|7 | Structure of the idle mammalian ribosome-Sec61 complex | ELECTRON MICROSCOPY | 3.4 | 120 |
| 8 | 6D90|1|7 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 119 |
| 9 | 5LZV|1|7 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | ELECTRON MICROSCOPY | 3.35 | 120 |
| 10 | 5LZS|1|7 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | ELECTRON MICROSCOPY | 3.31 | 119 |
| 11 | 5LZZ|1|7 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | ELECTRON MICROSCOPY | 3.47 | 120 |
| 12 | 3JAH|1|7 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | ELECTRON MICROSCOPY | 3.45 | 120 |