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Equivalence class NR_3.5_14145.1 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14WRT|1|V+ 4WRT|1|R (rep)Influenza virus polymerase vRNA promoter 5' end, Influenza virus polymerase vRNA promoter 3' endInfluenza B virusCrystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2)X-ray diffraction2.72014-11-19
26QCW|1|V+ 6QCW|1|R+ 6QCW|1|MRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*CP*AP*UP*AP*AP*UP*AP*G)-3')synthetic constructCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primerX-ray diffraction2.882019-06-05
36QCX|1|V+ 6QCX|1|R+ 6QCX|1|MRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*GP*C)-3')synthetic constructCrystal structure of influenza B polymerase initiation state with capped 15-mer RNA primerX-ray diffraction3.082019-06-05
47Z43|1|VVV+ 7Z43|1|RRRRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*CP*CP*UP*GP*CP*U)-3')Influenza B virusInfluenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 1B and 2BX-ray diffraction3.1232022-05-11
56QCV|1|V+ 6QCV|1|R+ 6QCV|1|MRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3'), RNA (5'-D(*(GDM))-R(P*GP*AP*AP*UP*GP*CP*UP*AP*UP*AP*AP*UP*AP*G)-3')synthetic constructCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTPX-ray diffraction3.242019-06-05
64WSA|1|V+ 4WSA|1|RInfluenza B vRNA promoter 5' end, Influenza B vRNA promoter 3' endInfluenza B virusCrystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form)X-ray diffraction3.42014-11-19
75M3J|1|V+ 5M3J|1|RRNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3'), RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*C)-3')Influenza B virusInfluenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTDX-ray diffraction3.52016-12-21
87R0E|1|V+ 7R0E|1|R+ 7R0E|1|M5' vRNA, 3' vRNA, mRNAInfluenza A virusEarly transcription elongation state of influenza A/H7N9 polymerase backtracked due to double incoproation of nucleotide analogue T1106 and with singly incoporated T1106 at the +1 positionElectron microscopy2.512022-12-28
96T0N|1|V+ 6T0N|1|R5' vRNA, 3' vRNAInfluenza B virusBat Influenza A polymerase pre-initiation complexElectron microscopy2.542020-04-15
106SZV|1|V5' vRNAInfluenza B virusBat Influenza A polymerase elongation complex with incoming UTP analogue (core + endonuclease only)Electron microscopy2.52020-04-15
118BEK|1|V+ 8BEK|1|R+ 8BEK|1|M5' vRNA, 3' vRNA, mRNAInfluenza A virusEarly transcription elongation state of influenza A/H7N9 backtracked polymerase with singly incoporated T1106 at the U +1 positionElectron microscopy2.862022-12-28
127QTL|1|V5' vRNAInfluenza A virusInfluenza A/H7N9 polymerase elongation complexElectron microscopy2.482022-12-28
137R1F|1|V5' vRNAInfluenza B virusEarly transcription elongation state of influenza B polymerase backtracked due to double incoproation of nucleotide analogue T1106Electron microscopy2.582022-12-28
146QCS|1|V+ 6QCS|1|R5 end, 3 endInfluenza B virusInfluenza B polymerase pre-initiation complexElectron microscopy3.12019-06-05
156T0V|1|V5' vRNAInfluenza A virusBat Influenza A polymerase elongation complex with incoming UTP analogue (complete polymerase)Electron microscopy3.022020-04-15
166QCT|1|V5 endInfluenza B virusInfluenza B polymerase elongation complexElectron microscopy3.22019-06-05
177ZPL|1|U5' vRNAInfluenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9))Symmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hookElectron microscopy3.122022-12-28
187ZPL|1|V5' vRNAInfluenza A virus (A/Zhejiang/DTID-ZJU01/2013(H7N9))Symmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hookElectron microscopy3.122022-12-28

Release history

Release3.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.331
Date2022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-17

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_14145.1NR_3.5_36180.13.263(1) 6SZV|1|V(17) 6QCW|1|V+6QCW|1|R+6QCW|1|M, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 6QCT|1|V, 6QCS|1|V+6QCS|1|R, 5M3J|1|V+5M3J|1|R, 4WSA|1|V+4WSA|1|R, 4WRT|1|V+4WRT|1|R, 8BEK|1|V+8BEK|1|R+8BEK|1|M, 7ZPL|1|V, 7ZPL|1|U, 7Z43|1|VVV+7Z43|1|RRR, 7R1F|1|V, 7R0E|1|V+7R0E|1|R+7R0E|1|M, 7QTL|1|V, 6T0V|1|V, 6T0N|1|V+6T0N|1|R, 6QCX|1|V+6QCX|1|R+6QCX|1|M(0)
NR_3.5_14145.1NR_3.5_45043.43.263(9) 5M3J|1|V+5M3J|1|R, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 4WSA|1|V+4WSA|1|R, 7Z43|1|VVV+7Z43|1|RRR, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 4WRT|1|V+4WRT|1|R, 6T0N|1|V+6T0N|1|R, 6QCS|1|V+6QCS|1|R, 6QCX|1|V+6QCX|1|R+6QCX|1|M(9) 7QTL|1|V, 8BEK|1|V+8BEK|1|R+8BEK|1|M, 6T0V|1|V, 7ZPL|1|V, 6SZV|1|V, 7ZPL|1|U, 6QCT|1|V, 7R1F|1|V, 7R0E|1|V+7R0E|1|R+7R0E|1|M(0)
NR_3.5_14145.1NR_3.5_56913.13.263(1) 6T0V|1|V(17) 6QCT|1|V, 6QCS|1|V+6QCS|1|R, 5M3J|1|V+5M3J|1|R, 4WSA|1|V+4WSA|1|R, 4WRT|1|V+4WRT|1|R, 8BEK|1|V+8BEK|1|R+8BEK|1|M, 7ZPL|1|V, 7ZPL|1|U, 7Z43|1|VVV+7Z43|1|RRR, 7R1F|1|V, 7R0E|1|V+7R0E|1|R+7R0E|1|M, 7QTL|1|V, 6T0N|1|V+6T0N|1|R, 6SZV|1|V, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 6QCV|1|V+6QCV|1|R+6QCV|1|M(0)
NR_3.5_14145.1NR_3.5_57831.13.263(1) 6QCT|1|V(17) 8BEK|1|V+8BEK|1|R+8BEK|1|M, 7ZPL|1|V, 7ZPL|1|U, 7Z43|1|VVV+7Z43|1|RRR, 7R1F|1|V, 7R0E|1|V+7R0E|1|R+7R0E|1|M, 7QTL|1|V, 6T0V|1|V, 6T0N|1|V+6T0N|1|R, 6SZV|1|V, 6QCX|1|V+6QCX|1|R+6QCX|1|M, 6QCW|1|V+6QCW|1|R+6QCW|1|M, 6QCV|1|V+6QCV|1|R+6QCV|1|M, 6QCS|1|V+6QCS|1|R, 5M3J|1|V+5M3J|1|R, 4WSA|1|V+4WSA|1|R, 4WRT|1|V+4WRT|1|R(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16T0N|1|V+6T0N|1|RBat Influenza A polymerase pre-initiation complexELECTRON MICROSCOPY2.5414
27R0E|1|V+7R0E|1|R+7R0E|1|MEarly transcription elongation state of influenza A/H7N9 polymerase backtracked due to double incoproation of nucleotide analogue T1106 and with singly incoporated T1106 at the +1 positionELECTRON MICROSCOPY2.5114
38BEK|1|V+8BEK|1|R+8BEK|1|MEarly transcription elongation state of influenza A/H7N9 backtracked polymerase with singly incoporated T1106 at the U +1 positionELECTRON MICROSCOPY2.8614
44WRT|1|V+4WRT|1|RCrystal structure of Influenza B polymerase with bound vRNA promoter (form FluB2)X-RAY DIFFRACTION2.714
56QCS|1|V+6QCS|1|RInfluenza B polymerase pre-initiation complexELECTRON MICROSCOPY3.114
64WSA|1|V+4WSA|1|RCrystal structure of Influenza B polymerase bound to the vRNA promoter (FluB1 form)X-RAY DIFFRACTION3.414
75M3J|1|V+5M3J|1|RInfluenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTDX-RAY DIFFRACTION3.514
87Z43|1|VVV+7Z43|1|RRRInfluenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 1B and 2BX-RAY DIFFRACTION3.12314
96QCW|1|V+6QCW|1|R+6QCW|1|MCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primerX-RAY DIFFRACTION2.8814
106QCX|1|V+6QCX|1|R+6QCX|1|MCrystal structure of influenza B polymerase initiation state with capped 15-mer RNA primerX-RAY DIFFRACTION3.0814
116QCV|1|V+6QCV|1|R+6QCV|1|MCrystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTPX-RAY DIFFRACTION3.2414
127QTL|1|VInfluenza A/H7N9 polymerase elongation complexELECTRON MICROSCOPY2.4813
137ZPL|1|VSymmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hookELECTRON MICROSCOPY3.1212
147ZPL|1|USymmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hookELECTRON MICROSCOPY3.1212
156SZV|1|VBat Influenza A polymerase elongation complex with incoming UTP analogue (core + endonuclease only)ELECTRON MICROSCOPY2.514
166T0V|1|VBat Influenza A polymerase elongation complex with incoming UTP analogue (complete polymerase)ELECTRON MICROSCOPY3.0214
177R1F|1|VEarly transcription elongation state of influenza B polymerase backtracked due to double incoproation of nucleotide analogue T1106ELECTRON MICROSCOPY2.5812
186QCT|1|VInfluenza B polymerase elongation complexELECTRON MICROSCOPY3.213
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