Equivalence class NR_3.5_33912.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3S17|1|R (rep) | RNA (5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*G)-3') | RNA Polymerase II Initiation Complex with a 9-nt RNA | X-ray diffraction | 3.2 | 2011-08-10 | ||||
| 2 | 6UPY|1|R | RNA | synthetic construct | RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 2E | X-ray diffraction | 3.4 | 2020-06-10 | |||
| 3 | 6UQ2|1|R | RNA | synthetic construct | RNA polymerase II elongation complex with dG in state 1 | X-ray diffraction | 3.2 | 2020-06-10 | |||
| 4 | 6UPX|1|R | RNA | synthetic construct | RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 1 | X-ray diffraction | 3.4 | 2020-06-10 | |||
| 5 | 2E2J|1|R | 5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*G)-3' | synthetic construct | RNA polymerase II elongation complex in 5 mM Mg+2 with GMPCPP | X-ray diffraction | 3.5 | 2006-12-12 | |||
| 6 | 6O6C|1|K | RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*G)-3') | Saccharomyces cerevisiae | RNA polymerase II elongation complex arrested at a CPD lesion | Electron microscopy | 3.1 | 2019-06-26 |
Release history
| Release | 3.130 | 3.131 | 3.132 | 3.133 | 3.134 | 3.135 | 3.136 | 3.137 | 3.138 | 3.139 | 3.140 | 3.141 | 3.142 | 3.143 | 3.144 | 3.145 | 3.146 | 3.147 | 3.148 | 3.149 | 3.150 | 3.151 | 3.152 | 3.153 | 3.154 | 3.155 | 3.156 | 3.157 | 3.158 | 3.159 | 3.160 | 3.161 | 3.162 | 3.163 | 3.164 | 3.165 | 3.166 | 3.167 | 3.168 | 3.169 | 3.170 | 3.171 | 3.172 | 3.173 | 3.174 | 3.175 | 3.176 | 3.177 | 3.178 | 3.179 | 3.180 | 3.181 | 3.182 | 3.183 | 3.184 | 3.185 | 3.186 | 3.187 | 3.188 | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 |
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| Date | 2020-06-10 | 2020-06-17 | 2020-06-24 | 2020-07-01 | 2020-07-08 | 2020-07-15 | 2020-07-22 | 2020-07-29 | 2020-08-05 | 2020-08-12 | 2020-08-19 | 2020-08-26 | 2020-09-02 | 2020-09-09 | 2020-09-16 | 2020-09-23 | 2020-09-30 | 2020-10-07 | 2020-10-14 | 2020-10-21 | 2020-10-28 | 2020-11-04 | 2020-11-11 | 2020-11-18 | 2020-11-25 | 2020-12-02 | 2020-12-09 | 2020-12-16 | 2020-12-23 | 2020-12-30 | 2021-01-06 | 2021-01-13 | 2021-01-20 | 2021-01-27 | 2021-02-03 | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 | 2021-03-10 | 2021-03-17 | 2021-03-24 | 2021-03-31 | 2021-04-07 | 2021-04-14 | 2021-04-21 | 2021-04-28 | 2021-05-05 | 2021-05-12 | 2021-05-19 | 2021-05-26 | 2021-06-02 | 2021-06-09 | 2021-06-16 | 2021-06-23 | 2021-06-30 | 2021-07-07 | 2021-07-14 | 2021-07-21 | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 |
Parents
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 2E2J|1|R | RNA polymerase II elongation complex in 5 mM Mg+2 with GMPCPP | X-RAY DIFFRACTION | 3.5 | 9 | |
| 2 | 6UPY|1|R | RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 2E | X-RAY DIFFRACTION | 3.4 | 9 | |
| 3 | 6UPX|1|R | RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 1 | X-RAY DIFFRACTION | 3.4 | 9 | |
| 4 | 3S17|1|R | RNA Polymerase II Initiation Complex with a 9-nt RNA | X-RAY DIFFRACTION | 3.2 | 9 | |
| 5 | 6UQ2|1|R | RNA polymerase II elongation complex with dG in state 1 | X-RAY DIFFRACTION | 3.2 | 9 | |
| 6 | 6O6C|1|K | RNA polymerase II elongation complex arrested at a CPD lesion | ELECTRON MICROSCOPY | 3.1 | 9 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: