Equivalence class NR_3.5_84517.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5FJC|1|A (rep) | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant C-2bU | X-ray diffraction | 1.71 | 2016-05-25 |
| 2 | 5FK4|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UU | X-ray diffraction | 2.43 | 2016-05-25 |
| 3 | 2YGH|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch with a G2nA mutation in the Kink turn in complex with S-adenosylmethionine | X-ray diffraction | 2.6 | 2011-09-07 |
| 4 | 3GX5|1|A | SAM riboswitch | RNA (94-MER) | RF00162 | Crystal structure of T. tencongensis SAM-I riboswitch variant A94G/U34 bound with SAM | X-ray diffraction | 2.4 | 2010-01-12 | ||
| 5 | 4B5R|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui K-t-7 | X-ray diffraction | 2.95 | 2013-01-30 |
| 6 | 5FK3|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CC | X-ray diffraction | 2.5 | 2016-05-25 |
| 7 | 5FK2|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GG | X-ray diffraction | 2.6 | 2016-05-25 |
| 8 | 5FKF|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UC | X-ray diffraction | 2.8 | 2016-05-25 |
| 9 | 3GX3|1|A | SAM riboswitch | RNA (94-MER) | RF00162 | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAH | X-ray diffraction | 2.7 | 2010-01-12 | ||
| 10 | 5FK6|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CA | X-ray diffraction | 2.5 | 2016-05-25 |
| 11 | 3IQR|1|A | SAM riboswitch | SAM-I riboswitch | RF00162 | SAM-I riboswitch from T. tencongensis variant A94G bound with SAM | X-ray diffraction | 2.55 | 2010-08-04 | ||
| 12 | 7EAF|1|A | SAM riboswitch | RNA (94-MER) | Caldanaerobacter subterraneus subsp. tengcongensis | Bacteria | RF00162 | Crystal structure of SAM-I riboswitch with the Actinomyces-1 k-turn | X-ray diffraction | 2.85 | 2021-06-02 |
| 13 | 3IQP|1|A | SAM riboswitch | SAM-I riboswitch | RF00162 | SAM-I riboswitch from T. tencongensis variant A94G apo form | X-ray diffraction | 2.9 | 2010-08-04 | ||
| 14 | 3GX7|1|A | SAM riboswitch | RNA (94-MER) | RF00162 | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G mutant A6C/U7G/A87C/U88G bound with SAM | X-ray diffraction | 2.95 | 2010-01-12 | ||
| 15 | 3IQN|1|A | SAM riboswitch | SAM-I riboswitch | RF00162 | Free-state structural transitions of the SAM-I riboswitch | X-ray diffraction | 2.7 | 2010-08-04 | ||
| 16 | 5FK1|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UG | X-ray diffraction | 2.5 | 2016-05-25 |
| 17 | 5FKD|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA | X-ray diffraction | 3 | 2016-05-25 |
| 18 | 2GIS|1|A | SAM riboswitch | SAM-I riboswitch | RF00162 | Structure of the S-adenosylmethionine riboswitch mRNA regulatory element | X-ray diffraction | 2.9 | 2006-07-04 | ||
| 19 | 2YDH|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | Crystal structure of the SAM-I riboswitch A94G U34 G18U G19U variant in complex with SAM | X-ray diffraction | 2.9 | 2011-09-07 |
| 20 | 3GX2|1|A | SAM riboswitch | RNA (94-MER) | RF00162 | TteSAM-I riboswitch variant A94GU34C bound to sinefungin | X-ray diffraction | 2.9 | 2010-01-12 | ||
| 21 | 5FKH|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CU | X-ray diffraction | 2.65 | 2016-05-25 |
| 22 | 5FKG|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CG | X-ray diffraction | 2.95 | 2016-05-25 |
| 23 | 5FKE|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GU | X-ray diffraction | 2.8 | 2016-05-25 |
| 24 | 3GX6|1|A | SAM riboswitch | RNA (94-MER) | RF00162 | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese chloride | X-ray diffraction | 2.8 | 2010-01-12 | ||
| 25 | 5FK5|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is AA | X-ray diffraction | 3.32 | 2016-05-25 |
Release history
| Release | 3.181 | 3.182 | 3.183 | 3.184 | 3.185 | 3.186 | 3.187 | 3.188 | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-06-02 | 2021-06-09 | 2021-06-16 | 2021-06-23 | 2021-06-30 | 2021-07-07 | 2021-07-14 | 2021-07-21 | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_84517.1 | NR_3.5_31222.1 | 3.181 | (13) 5FK6|1|A, 5FK1|1|A, 5FKF|1|A, 5FK3|1|A, 5FKH|1|A, 5FJC|1|A, 5FKE|1|A, 5FK5|1|A, 5FK2|1|A, 5FKG|1|A, 4B5R|1|A, 5FKD|1|A, 5FK4|1|A | (12) 3GX3|1|A, 2GIS|1|A, 3IQN|1|A, 3GX2|1|A, 7EAF|1|A, 3GX7|1|A, 2YGH|1|A, 3IQR|1|A, 3GX6|1|A, 2YDH|1|A, 3IQP|1|A, 3GX5|1|A | (0) |
| NR_3.5_84517.1 | NR_3.5_82809.4 | 3.181 | (11) 2YGH|1|A, 3IQP|1|A, 3GX3|1|A, 3GX6|1|A, 3IQN|1|A, 2YDH|1|A, 3IQR|1|A, 3GX2|1|A, 3GX5|1|A, 3GX7|1|A, 2GIS|1|A | (14) 5FK1|1|A, 4B5R|1|A, 5FK5|1|A, 5FKF|1|A, 5FJC|1|A, 7EAF|1|A, 5FK4|1|A, 5FKE|1|A, 5FKH|1|A, 5FK3|1|A, 5FKD|1|A, 5FKG|1|A, 5FK2|1|A, 5FK6|1|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5FJC|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant C-2bU | X-RAY DIFFRACTION | 1.71 | 96 |
| 2 | 4B5R|1|A | SAM-I riboswitch bearing the H. marismortui K-t-7 | X-RAY DIFFRACTION | 2.95 | 94 |
| 3 | 5FK4|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UU | X-RAY DIFFRACTION | 2.43 | 93 |
| 4 | 5FK5|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is AA | X-RAY DIFFRACTION | 3.32 | 94 |
| 5 | 5FKG|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CG | X-RAY DIFFRACTION | 2.95 | 94 |
| 6 | 5FKE|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GU | X-RAY DIFFRACTION | 2.8 | 94 |
| 7 | 5FK6|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CA | X-RAY DIFFRACTION | 2.5 | 94 |
| 8 | 5FKD|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA | X-RAY DIFFRACTION | 3 | 94 |
| 9 | 5FK2|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GG | X-RAY DIFFRACTION | 2.6 | 94 |
| 10 | 5FK3|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CC | X-RAY DIFFRACTION | 2.5 | 95 |
| 11 | 5FKF|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UC | X-RAY DIFFRACTION | 2.8 | 94 |
| 12 | 5FK1|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UG | X-RAY DIFFRACTION | 2.5 | 94 |
| 13 | 5FKH|1|A | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CU | X-RAY DIFFRACTION | 2.65 | 94 |
| 14 | 7EAF|1|A | Crystal structure of SAM-I riboswitch with the Actinomyces-1 k-turn | X-RAY DIFFRACTION | 2.85 | 95 |
| 15 | 3GX3|1|A | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAH | X-RAY DIFFRACTION | 2.7 | 94 |
| 16 | 3GX7|1|A | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G mutant A6C/U7G/A87C/U88G bound with SAM | X-RAY DIFFRACTION | 2.95 | 94 |
| 17 | 3GX6|1|A | Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese chloride | X-RAY DIFFRACTION | 2.8 | 94 |
| 18 | 2YDH|1|A | Crystal structure of the SAM-I riboswitch A94G U34 G18U G19U variant in complex with SAM | X-RAY DIFFRACTION | 2.9 | 94 |
| 19 | 3GX5|1|A | Crystal structure of T. tencongensis SAM-I riboswitch variant A94G/U34 bound with SAM | X-RAY DIFFRACTION | 2.4 | 94 |
| 20 | 3GX2|1|A | TteSAM-I riboswitch variant A94GU34C bound to sinefungin | X-RAY DIFFRACTION | 2.9 | 94 |
| 21 | 2GIS|1|A | Structure of the S-adenosylmethionine riboswitch mRNA regulatory element | X-RAY DIFFRACTION | 2.9 | 94 |
| 22 | 3IQN|1|A | Free-state structural transitions of the SAM-I riboswitch | X-RAY DIFFRACTION | 2.7 | 94 |
| 23 | 2YGH|1|A | SAM-I riboswitch with a G2nA mutation in the Kink turn in complex with S-adenosylmethionine | X-RAY DIFFRACTION | 2.6 | 94 |
| 24 | 3IQR|1|A | SAM-I riboswitch from T. tencongensis variant A94G bound with SAM | X-RAY DIFFRACTION | 2.55 | 94 |
| 25 | 3IQP|1|A | SAM-I riboswitch from T. tencongensis variant A94G apo form | X-RAY DIFFRACTION | 2.9 | 94 |