#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
12YGH|1|A (rep)SAM riboswitchSAM-I RIBOSWITCHCaldanaerobacter subterraneusBacteriaRF00162SAM-I riboswitch with a G2nA mutation in the Kink turn in complex with S-adenosylmethionineX-ray diffraction2.62011-09-07
23GX5|1|ARNA (94-MER)Crystal structure of T. tencongensis SAM-I riboswitch variant A94G/U34 bound with SAMX-ray diffraction2.42010-01-12
33GX3|1|ARNA (94-MER)Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAHX-ray diffraction2.72010-01-12
43IQR|1|ASAM-I riboswitchSAM-I riboswitch from T. tencongensis variant A94G bound with SAMX-ray diffraction2.552010-08-04
53IQP|1|ASAM-I riboswitchSAM-I riboswitch from T. tencongensis variant A94G apo formX-ray diffraction2.92010-08-04
63GX7|1|ARNA (94-MER)Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G mutant A6C/U7G/A87C/U88G bound with SAMX-ray diffraction2.952010-01-12
73IQN|1|ASAM-I riboswitchFree-state structural transitions of the SAM-I riboswitchX-ray diffraction2.72010-08-04
82GIS|1|ASAM-I riboswitchStructure of the S-adenosylmethionine riboswitch mRNA regulatory elementX-ray diffraction2.92006-07-04
92YDH|1|ASAM riboswitchSAM-I RIBOSWITCHCaldanaerobacter subterraneusBacteriaRF00162Crystal structure of the SAM-I riboswitch A94G U34 G18U G19U variant in complex with SAMX-ray diffraction2.92011-09-07
103GX2|1|ARNA (94-MER)TteSAM-I riboswitch variant A94GU34C bound to sinefunginX-ray diffraction2.92010-01-12
113GX6|1|ARNA (94-MER)Crystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese chlorideX-ray diffraction2.82010-01-12

Release history

Release2.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.1502.1512.1522.1532.1542.1552.1562.1572.1583.03.13.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.1503.1513.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.180
Date2017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-172017-11-242017-12-012017-12-082017-12-152017-12-222017-12-292018-01-052018-01-122018-01-192018-01-262018-02-022018-02-092018-02-162018-02-232018-03-012018-03-082018-03-152018-03-222018-03-292018-04-062018-04-132018-04-202018-04-272018-05-042018-05-112018-05-182018-05-252018-06-012018-06-082018-06-152018-06-222018-06-292018-07-062018-07-132018-07-202018-07-272018-08-032018-08-102018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-252019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-282020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_82809.4NR_3.5_82809.32.137(10) 2GIS|1|A, 2YDH|1|A, 3GX2|1|A, 3GX3|1|A, 3GX5|1|A, 3GX6|1|A, 3GX7|1|A, 3IQN|1|A, 3IQP|1|A, 3IQR|1|A(1) 2YGH|1|A(0)

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
12YGH|1|ASAM-I riboswitch with a G2nA mutation in the Kink turn in complex with S-adenosylmethionineX-RAY DIFFRACTION2.694
23GX3|1|ACrystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAHX-RAY DIFFRACTION2.794
33GX7|1|ACrystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G mutant A6C/U7G/A87C/U88G bound with SAMX-RAY DIFFRACTION2.9594
43GX6|1|ACrystal structure of the T. tengcongensis SAM-I riboswitch variant U34C/A94G bound with SAM in manganese chlorideX-RAY DIFFRACTION2.894
52YDH|1|ACrystal structure of the SAM-I riboswitch A94G U34 G18U G19U variant in complex with SAMX-RAY DIFFRACTION2.994
63GX5|1|ACrystal structure of T. tencongensis SAM-I riboswitch variant A94G/U34 bound with SAMX-RAY DIFFRACTION2.494
73GX2|1|ATteSAM-I riboswitch variant A94GU34C bound to sinefunginX-RAY DIFFRACTION2.994
82GIS|1|AStructure of the S-adenosylmethionine riboswitch mRNA regulatory elementX-RAY DIFFRACTION2.994
93IQN|1|AFree-state structural transitions of the SAM-I riboswitchX-RAY DIFFRACTION2.794
103IQR|1|ASAM-I riboswitch from T. tencongensis variant A94G bound with SAMX-RAY DIFFRACTION2.5594
113IQP|1|ASAM-I riboswitch from T. tencongensis variant A94G apo formX-RAY DIFFRACTION2.994

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

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