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Equivalence class NR_4.0_30457.10 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16BK8|1|5 (rep)U5 spliceosomal RNAU5 snRNA, RNA (34-MER)Saccharomyces cerevisiaeEukaryaRF00020S. cerevisiae spliceosomal post-catalytic P complexElectron microscopy3.32018-02-21
25GMK|1|DU5 spliceosomal RNAU5 snRNA, 5'-ExonSaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionElectron microscopy3.42016-08-17
35Y88|1|BU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstromElectron microscopy3.462018-08-01
46EXN|1|5U5 spliceosomal RNAU5 snRNA, Ligated exons: UBC4 mRNASaccharomyces cerevisiaeEukaryaRF00020Post-catalytic P complex spliceosome with 3' splice site dockedElectron microscopy3.72018-01-17
55YLZ|1|BU5 spliceosomal RNAU5 snRNA, mRNA/intron lariat, U2 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstromElectron microscopy3.62018-07-18
65LJ3|1|UU5 spliceosomal RNAU5 snRNA (small nuclear RNA), Exon 1 (5' exon) of UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Structure of the core of the yeast spliceosome immediately after branchingElectron microscopy3.82016-08-03
75ZWM|1|BU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part)Electron microscopy3.42018-08-29
85GAN|1|UU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 AngstromElectron microscopy3.72016-01-27
95MPS|1|5U5 spliceosomal RNAU5 snRNA, UBC4 gene exonSaccharomyces cerevisiaeEukaryaRF00020Structure of a spliceosome remodeled for exon ligationElectron microscopy3.852017-01-18
105WSG|1|DU5 spliceosomal RNAU5 snRNA, 5'-exonSaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionElectron microscopy42017-01-25
115GAM|1|UU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNPElectron microscopy3.72016-02-03
125ZWO|1|BU5 spliceosomal RNAU5 snRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstromElectron microscopy3.92018-08-29
133JCM|1|FU5 spliceosomal RNASNR7-L snRNA, SNR6 snRNA, pre-mRNASaccharomyces cerevisiaeEukaryaRF00020Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNPElectron microscopy3.82016-02-24

Release history

Release3.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.70
Date2018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-252019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-19

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_30457.10NR_4.0_30457.93.37(11) 6EXN|1|5, 6BK8|1|5, 5YLZ|1|B, 5Y88|1|B, 5WSG|1|D, 5MPS|1|5, 5LJ3|1|U, 5GMK|1|D, 5GAN|1|U, 5GAM|1|U, 3JCM|1|F(2) 5ZWM|1|B, 5ZWO|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_30457.10NR_4.0_30457.113.71(13) 5Y88|1|B, 6BK8|1|5, 5GMK|1|D, 5WSG|1|D, 5ZWO|1|B, 5GAN|1|U, 5MPS|1|5, 5ZWM|1|B, 5GAM|1|U, 5LJ3|1|U, 5YLZ|1|B, 6EXN|1|5, 3JCM|1|F(0) (4) 6J6N|1|D, 6J6H|1|D, 6J6G|1|D, 6J6Q|1|D

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
1
5MPS|1|5		Structure of a spliceosome remodeled for exon ligationELECTRON MICROSCOPY3.85141
2
5LJ3|1|U		Structure of the core of the yeast spliceosome immediately after branchingELECTRON MICROSCOPY3.8141
3
5Y88|1|B		Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstromELECTRON MICROSCOPY3.46117
4
5GMK|1|D		Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolutionELECTRON MICROSCOPY3.4117
5
5WSG|1|D		Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolutionELECTRON MICROSCOPY4117
6
5YLZ|1|B		Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstromELECTRON MICROSCOPY3.6117
7
6BK8|1|5		S. cerevisiae spliceosomal post-catalytic P complexELECTRON MICROSCOPY3.3103
8
6EXN|1|5		Post-catalytic P complex spliceosome with 3' splice site dockedELECTRON MICROSCOPY3.7171
9
5ZWO|1|B		Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstromELECTRON MICROSCOPY3.9175
10
5ZWM|1|B		Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part)ELECTRON MICROSCOPY3.4175
11
3JCM|1|F		Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNPELECTRON MICROSCOPY3.8113
12
5GAM|1|U		Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNPELECTRON MICROSCOPY3.7141
13
5GAN|1|U		The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 AngstromELECTRON MICROSCOPY3.7141

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