Equivalence class NR_4.0_37403.1 Current
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 6J9E|1|I (rep) | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | synthetic construct | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7 | ELECTRON MICROSCOPY | 3.41 | 2019-07-17 |
| 2 | 6X50|1|R | RNA (20-mer) | Mfd-bound E.coli RNA polymerase elongation complex - V state | ELECTRON MICROSCOPY | 3.3 | 2021-02-03 | |
| 3 | 6C6T|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.5 | 2018-07-25 |
| 4 | 6J9F|1|I | RNA (5'-R(P*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | synthetic construct | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7 | ELECTRON MICROSCOPY | 3.95 | 2019-07-17 |
| 5 | 6X4Y|1|R | RNA (20-mer) | Mfd-bound E.coli RNA polymerase elongation complex - IV state | ELECTRON MICROSCOPY | 3.6 | 2021-02-03 | |
| 6 | 6X43|1|R | RNA (20-mer) | Mfd-bound E.coli RNA polymerase elongation complex - II state | ELECTRON MICROSCOPY | 3.6 | 2021-02-03 | |
| 7 | 6C6U|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with NusG | ELECTRON MICROSCOPY | 3.7 | 2018-07-25 |
| 8 | 6C6S|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.7 | 2018-07-25 |
| 9 | 6X4W|1|R | RNA (20-mer) | Mfd-bound E.coli RNA polymerase elongation complex - III state | ELECTRON MICROSCOPY | 3.8 | 2021-02-03 | |
| 10 | 6X2N|1|R | RNA (20-MER) | Mfd-bound E.coli RNA polymerase elongation complex - I state | ELECTRON MICROSCOPY | 3.9 | 2021-02-03 | |
| 11 | 6X2F|1|R | RNA (20-MER) | Mfd-bound E.coli RNA polymerase elongation complex - L2 state | ELECTRON MICROSCOPY | 4 | 2021-02-03 |
Release history
| Release | 3.164 |
|---|---|
| Date | 2021-02-03 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_37403.1 | NR_4.0_04731.2 | 3.164 | (2) 6J9F|1|I, 6J9E|1|I | (9) 6X50|1|R, 6X4Y|1|R, 6X4W|1|R, 6X43|1|R, 6X2N|1|R, 6X2F|1|R, 6C6U|1|R, 6C6T|1|R, 6C6S|1|R | (0) |
| NR_4.0_37403.1 | NR_4.0_15897.1 | 3.164 | (3) 6C6T|1|R, 6C6S|1|R, 6C6U|1|R | (8) 6J9E|1|I, 6X50|1|R, 6X4Y|1|R, 6X4W|1|R, 6X43|1|R, 6X2N|1|R, 6X2F|1|R, 6J9F|1|I | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6X43|1|R | Mfd-bound E.coli RNA polymerase elongation complex - II state | ELECTRON MICROSCOPY | 3.6 | 10 |
| 2 | 6C6S|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.7 | 10 |
| 3 | 6C6T|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.5 | 10 |
| 4 | 6C6U|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with NusG | ELECTRON MICROSCOPY | 3.7 | 10 |
| 5 | 6X50|1|R | Mfd-bound E.coli RNA polymerase elongation complex - V state | ELECTRON MICROSCOPY | 3.3 | 9 |
| 6 | 6X2N|1|R | Mfd-bound E.coli RNA polymerase elongation complex - I state | ELECTRON MICROSCOPY | 3.9 | 9 |
| 7 | 6X2F|1|R | Mfd-bound E.coli RNA polymerase elongation complex - L2 state | ELECTRON MICROSCOPY | 4 | 9 |
| 8 | 6J9F|1|I | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7 | ELECTRON MICROSCOPY | 3.95 | 12 |
| 9 | 6J9E|1|I | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7 | ELECTRON MICROSCOPY | 3.41 | 12 |
| 10 | 6X4W|1|R | Mfd-bound E.coli RNA polymerase elongation complex - III state | ELECTRON MICROSCOPY | 3.8 | 9 |
| 11 | 6X4Y|1|R | Mfd-bound E.coli RNA polymerase elongation complex - IV state | ELECTRON MICROSCOPY | 3.6 | 10 |