Equivalence class NR_4.0_37403.1 Current
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 6J9E|1|I (rep) | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | synthetic construct | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7 | ELECTRON MICROSCOPY | 3.41 | 2019-07-17 |
| 2 | 6X50|1|R | RNA (20-mer) | Mfd-bound E.coli RNA polymerase elongation complex - V state | ELECTRON MICROSCOPY | 3.3 | 2021-02-03 | |
| 3 | 6C6T|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.5 | 2018-07-25 |
| 4 | 6J9F|1|I | RNA (5'-R(P*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | synthetic construct | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7 | ELECTRON MICROSCOPY | 3.95 | 2019-07-17 |
| 5 | 6X4Y|1|R | RNA (20-mer) | Mfd-bound E.coli RNA polymerase elongation complex - IV state | ELECTRON MICROSCOPY | 3.6 | 2021-02-03 | |
| 6 | 6X43|1|R | RNA (20-mer) | Mfd-bound E.coli RNA polymerase elongation complex - II state | ELECTRON MICROSCOPY | 3.6 | 2021-02-03 | |
| 7 | 6C6U|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with NusG | ELECTRON MICROSCOPY | 3.7 | 2018-07-25 |
| 8 | 6C6S|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.7 | 2018-07-25 |
| 9 | 6X4W|1|R | RNA (20-mer) | Mfd-bound E.coli RNA polymerase elongation complex - III state | ELECTRON MICROSCOPY | 3.8 | 2021-02-03 | |
| 10 | 6X2N|1|R | RNA (20-MER) | Mfd-bound E.coli RNA polymerase elongation complex - I state | ELECTRON MICROSCOPY | 3.9 | 2021-02-03 | |
| 11 | 6X2F|1|R | RNA (20-MER) | Mfd-bound E.coli RNA polymerase elongation complex - L2 state | ELECTRON MICROSCOPY | 4 | 2021-02-03 |
Release history
| Release | 3.164 | 3.165 | 3.166 | 3.167 | 3.168 | 3.169 | 3.170 | 3.171 | 3.172 | 3.173 | 3.174 | 3.175 | 3.176 | 3.177 | 3.178 | 3.179 | 3.180 | 3.181 | 3.182 | 3.183 | 3.184 | 3.185 | 3.186 | 3.187 | 3.188 | 3.189 | 3.190 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-02-03 | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 | 2021-03-10 | 2021-03-17 | 2021-03-24 | 2021-03-31 | 2021-04-07 | 2021-04-14 | 2021-04-21 | 2021-04-28 | 2021-05-05 | 2021-05-12 | 2021-05-19 | 2021-05-26 | 2021-06-02 | 2021-06-09 | 2021-06-16 | 2021-06-23 | 2021-06-30 | 2021-07-07 | 2021-07-14 | 2021-07-21 | 2021-07-28 | 2021-08-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_37403.1 | NR_4.0_04731.2 | 3.164 | (2) 6J9F|1|I, 6J9E|1|I | (9) 6X4Y|1|R, 6X4W|1|R, 6X43|1|R, 6X2N|1|R, 6X2F|1|R, 6C6U|1|R, 6C6T|1|R, 6C6S|1|R, 6X50|1|R | (0) |
| NR_4.0_37403.1 | NR_4.0_15897.1 | 3.164 | (3) 6C6U|1|R, 6C6T|1|R, 6C6S|1|R | (8) 6X50|1|R, 6X4Y|1|R, 6X4W|1|R, 6X43|1|R, 6X2N|1|R, 6X2F|1|R, 6J9F|1|I, 6J9E|1|I | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6X43|1|R | Mfd-bound E.coli RNA polymerase elongation complex - II state | ELECTRON MICROSCOPY | 3.6 | 10 |
| 2 | 6C6S|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.7 | 10 |
| 3 | 6C6T|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.5 | 10 |
| 4 | 6C6U|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with NusG | ELECTRON MICROSCOPY | 3.7 | 10 |
| 5 | 6X50|1|R | Mfd-bound E.coli RNA polymerase elongation complex - V state | ELECTRON MICROSCOPY | 3.3 | 9 |
| 6 | 6X2N|1|R | Mfd-bound E.coli RNA polymerase elongation complex - I state | ELECTRON MICROSCOPY | 3.9 | 9 |
| 7 | 6X2F|1|R | Mfd-bound E.coli RNA polymerase elongation complex - L2 state | ELECTRON MICROSCOPY | 4 | 9 |
| 8 | 6J9F|1|I | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7 | ELECTRON MICROSCOPY | 3.95 | 12 |
| 9 | 6J9E|1|I | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7 | ELECTRON MICROSCOPY | 3.41 | 12 |
| 10 | 6X4W|1|R | Mfd-bound E.coli RNA polymerase elongation complex - III state | ELECTRON MICROSCOPY | 3.8 | 9 |
| 11 | 6X4Y|1|R | Mfd-bound E.coli RNA polymerase elongation complex - IV state | ELECTRON MICROSCOPY | 3.6 | 10 |