Equivalence class NR_4.0_56101.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7O1A|1|B8 (rep) | Transfer RNA | P-site tRNA-Pro, mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan | Electron microscopy | 2.4 | 2021-09-01 |
| 2 | 7O1C|1|B8 | Transfer RNA | P-site tRNA-Pro, mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan | Electron microscopy | 2.6 | 2021-09-01 |
| 3 | 7O19|1|B8 | Transfer RNA | P-site tRNA-Pro, mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan | Electron microscopy | 2.9 | 2021-09-01 |
| 4 | 6SZS|1|x | Transfer RNA | P-site tRNA-Pro(CGG), mRNA | Escherichia coli | Bacteria | RF00005 | Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis | Electron microscopy | 3.06 | 2019-12-04 |
| 5 | 5MGP|1|x | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs | Electron microscopy | 3.1 | 2016-12-14 |
| 6 | 6ENU|1|x | Transfer RNA | Proline tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P) | Electron microscopy | 3.1 | 2017-11-22 |
| 7 | 6ENF|1|x | Transfer RNA | proline tRNA, RNA (5'-R(P*CP*CP*G)-3'), mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P | Electron microscopy | 3.2 | 2017-11-22 |
| 8 | 7CPJ|1|9 | Transfer RNA | P/P tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | ycbZ-stalled 70S ribosome | Electron microscopy | 3.3 | 2021-12-08 |
| 9 | 6NUO|1|XV | Transfer RNA | P-site tRNA-Pro, mRNA | Escherichia coli | Bacteria | RF00005 | Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-ray diffraction | 3.2 | 2020-10-14 |
| 10 | 6NUO|1|QV | Transfer RNA | P-site tRNA-Pro, mRNA | Escherichia coli | Bacteria | RF00005 | Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-ray diffraction | 3.2 | 2020-10-14 |
| 11 | 6ENJ|1|x | Transfer RNA | Proline tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P) | Electron microscopy | 3.7 | 2017-11-22 |
| 12 | 6ENJ|1|9 | Transfer RNA | Proline tRNA | Escherichia coli | Bacteria | RF00005 | Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P) | Electron microscopy | 3.7 | 2017-11-22 |
| 13 | 6O3M|1|QV | Transfer RNA | P-site ASLPro, mRNA | Escherichia coli | Bacteria | RF00005 | Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-ray diffraction | 3.97 | 2020-10-14 |
| 14 | 6O3M|1|XV | Transfer RNA | P-site ASLPro, mRNA | Escherichia coli | Bacteria | RF00005 | Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-ray diffraction | 3.97 | 2020-10-14 |
Release history
| Release | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_56101.3 | NR_4.0_56101.4 | 3.243 | (14) 6ENJ|1|9, 6O3M|1|QV, 7O1C|1|B8, 7O1A|1|B8, 6ENF|1|x, 6NUO|1|XV, 7O19|1|B8, 5MGP|1|x, 6NUO|1|QV, 7CPJ|1|9, 6ENU|1|x, 6SZS|1|x, 6ENJ|1|x, 6O3M|1|XV | (0) | (3) 7ZOD|1|v, 7ZP8|1|v, 7Z20|1|v |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6NUO|1|QV | Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-RAY DIFFRACTION | 3.2 | 76 |
| 2 | 6O3M|1|QV | Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-RAY DIFFRACTION | 3.97 | 77 |
| 3 | 6O3M|1|XV | Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-RAY DIFFRACTION | 3.97 | 77 |
| 4 | 6NUO|1|XV | Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | X-RAY DIFFRACTION | 3.2 | 76 |
| 5 | 7O19|1|B8 | Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan | ELECTRON MICROSCOPY | 2.9 | 77 |
| 6 | 7O1C|1|B8 | Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan | ELECTRON MICROSCOPY | 2.6 | 77 |
| 7 | 7O1A|1|B8 | Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan | ELECTRON MICROSCOPY | 2.4 | 74 |
| 8 | 6SZS|1|x | Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis | ELECTRON MICROSCOPY | 3.06 | 77 |
| 9 | 5MGP|1|x | Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs | ELECTRON MICROSCOPY | 3.1 | 77 |
| 10 | 7CPJ|1|9 | ycbZ-stalled 70S ribosome | ELECTRON MICROSCOPY | 3.3 | 77 |
| 11 | 6ENF|1|x | Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P | ELECTRON MICROSCOPY | 3.2 | 77 |
| 12 | 6ENU|1|x | Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P) | ELECTRON MICROSCOPY | 3.1 | 77 |
| 13 | 6ENJ|1|x | Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P) | ELECTRON MICROSCOPY | 3.7 | 77 |
| 14 | 6ENJ|1|9 | Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P) | ELECTRON MICROSCOPY | 3.7 | 77 |