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Equivalence class NR_all_03265.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
12KX5|1|A (rep)HIV TAR RNARecognition of HIV TAR RNA by peptide mimetic of Tat proteinSolution NMR2010-07-07
22KDQ|1|BHIV-1 TAR RNASimultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimic of Tat proteinSolution NMR2009-06-23
31UUI|1|B5'-R(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP*CP* CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C)-3'Human immunodeficiency virus 1NMR structure of a synthetic small molecule, rbt158, bound to HIV-1 TAR RNASolution NMR2004-02-12
42L8H|3|AHIV TAR RNAChemical probe bound to HIV TAR RNASolution NMR2011-03-23
51UUD|1|BRNA (5'-(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP *CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C) -3')Human immunodeficiency virus 1NMR structure of a synthetic small molecule, rbt203, bound to HIV-1 TAR RNASolution NMR2004-03-15
61UTS|2|BRNA (5'-(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP *CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C) -3')Human immunodeficiency virus 1Designed HIV-1 TAR Binding LigandSolution NMR2004-02-12
71ARJ|7|NTAR RNAARG-BOUND TAR RNA, NMRSolution NMR1996-11-08
81ANR|2|ARNA REGULATORY ELEMENT TARCIS-ACTING RNA REGULATORY ELEMENT (HIV-1 TAR), NMR, 20 STRUCTURESSolution NMR1997-01-11

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.45
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-16

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_03265.1NR_all_03265.22.46(8) 2KDQ|1|B, 1UUI|1|B, 1UUD|1|B, 1UTS|2|B, 1ARJ|7|N, 1ANR|2|A, 2L8H|3|A, 2KX5|1|A(0) (1) 1QD3|1|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
11UTS|2|BDesigned HIV-1 TAR Binding LigandSOLUTION NMR29
21UUI|1|BNMR structure of a synthetic small molecule, rbt158, bound to HIV-1 TAR RNASOLUTION NMR29
31UUD|1|BNMR structure of a synthetic small molecule, rbt203, bound to HIV-1 TAR RNASOLUTION NMR29
41ARJ|7|NARG-BOUND TAR RNA, NMRSOLUTION NMR29
52KDQ|1|BSimultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimic of Tat proteinSOLUTION NMR29
62KX5|1|ARecognition of HIV TAR RNA by peptide mimetic of Tat proteinSOLUTION NMR29
72L8H|3|AChemical probe bound to HIV TAR RNASOLUTION NMR29
81ANR|2|ACIS-ACTING RNA REGULATORY ELEMENT (HIV-1 TAR), NMR, 20 STRUCTURESSOLUTION NMR29
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