#IFECompound(s)RNA source organismTitleMethodResolutionDate
15J2W|1|B (rep)Apical region (29mer) of the HIV-1 TAR RNA elementHuman immunodeficiency virus 1Intermediate state lying on the pathway of release of Tat from HIV-1 TAR.SOLUTION NMR2016-06-08
22KX5|1|AHIV TAR RNARecognition of HIV TAR RNA by peptide mimetic of Tat proteinSOLUTION NMR2010-07-07
32KDQ|1|BHIV-1 TAR RNASimultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimic of Tat proteinSOLUTION NMR2009-06-23
41UUI|1|B5'-R(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP*CP* CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C)-3'Human immunodeficiency virus 1NMR structure of a synthetic small molecule, rbt158, bound to HIV-1 TAR RNASOLUTION NMR2004-02-12
51QD3|1|AHIV-1 TAR RNAHuman immunodeficiency virus 1HIV-1 TAR RNA/NEOMYCIN B COMPLEXSOLUTION NMR2000-07-12
62L8H|3|AHIV TAR RNAChemical probe bound to HIV TAR RNASOLUTION NMR2011-03-23
75J1O|2|BApical region (29mer) of the HIV-1 TAR elementHuman immunodeficiency virus 1Excited state (Bound-like) sampled during RDC restrained Replica-averaged Metadynamics (RAM) simulations of the HIV-1 TAR complexed with cyclic peptide mimetic of TatSOLUTION NMR2016-06-08
81UUD|1|BRNA (5'-(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP *CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C) -3')Human immunodeficiency virus 1NMR structure of a synthetic small molecule, rbt203, bound to HIV-1 TAR RNASOLUTION NMR2004-03-15
95J0M|1|BApical region (29-mer) of the HIV-1 TAR RNA elementHuman immunodeficiency virus 1Ground state sampled during RDC restrained Replica-averaged Metadynamics (RAM) simulations of the HIV-1 TAR complexed with cyclic peptide mimetic of TatSOLUTION NMR2016-06-08
101UTS|2|BRNA (5'-(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP *CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C) -3')Human immunodeficiency virus 1Designed HIV-1 TAR Binding LigandSOLUTION NMR2004-02-12
111ARJ|7|NTAR RNAARG-BOUND TAR RNA, NMRSOLUTION NMR1996-11-08
121ANR|2|ARNA REGULATORY ELEMENT TARCIS-ACTING RNA REGULATORY ELEMENT (HIV-1 TAR), NMR, 20 STRUCTURESSOLUTION NMR1997-01-11

Release history

Release2.792.802.812.822.832.842.852.862.872.882.892.902.912.92
Date2016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_03265.3NR_all_03265.22.79(9) 1UUD|1|B, 1UTS|2|B, 1QD3|1|A, 1ARJ|7|N, 1ANR|2|A, 2L8H|3|A, 2KX5|1|A, 2KDQ|1|B, 1UUI|1|B(3) 5J0M|1|B, 5J2W|1|B, 5J1O|2|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_03265.3NR_all_00786.12.93(1) 2KDQ|1|B(11) 1QD3|1|A, 1UUD|1|B, 2KX5|1|A, 5J0M|1|B, 1ARJ|7|N, 5J2W|1|B, 1UTS|2|B, 1UUI|1|B, 2L8H|3|A, 1ANR|2|A, 5J1O|2|B(0)
NR_all_03265.3NR_all_27126.12.93(1) 1QD3|1|A(11) 2L8H|3|A, 1ANR|2|A, 5J1O|2|B, 1UTS|2|B, 1UUI|1|B, 2KX5|1|A, 5J0M|1|B, 1ARJ|7|N, 5J2W|1|B, 1UUD|1|B, 2KDQ|1|B(0)
NR_all_03265.3NR_all_28654.12.93(1) 2KX5|1|A(11) 1UUI|1|B, 2L8H|3|A, 1ANR|2|A, 5J1O|2|B, 1QD3|1|A, 1UUD|1|B, 2KDQ|1|B, 5J0M|1|B, 1ARJ|7|N, 5J2W|1|B, 1UTS|2|B(0)
NR_all_03265.3NR_all_29847.12.93(1) 2L8H|3|A(11) 1ARJ|7|N, 5J2W|1|B, 1UTS|2|B, 1UUI|1|B, 2KX5|1|A, 1ANR|2|A, 5J1O|2|B, 1QD3|1|A, 1UUD|1|B, 2KDQ|1|B, 5J0M|1|B(0)
NR_all_03265.3NR_all_33015.12.93(1) 5J0M|1|B(11) 2KDQ|1|B, 2L8H|3|A, 1ARJ|7|N, 5J2W|1|B, 1UTS|2|B, 1UUI|1|B, 2KX5|1|A, 1ANR|2|A, 5J1O|2|B, 1QD3|1|A, 1UUD|1|B(0)
NR_all_03265.3NR_all_35232.12.93(1) 1UUD|1|B(11) 1UUI|1|B, 2KX5|1|A, 5J0M|1|B, 1ARJ|7|N, 5J2W|1|B, 1UTS|2|B, 2KDQ|1|B, 2L8H|3|A, 1ANR|2|A, 5J1O|2|B, 1QD3|1|A(0)
NR_all_03265.3NR_all_42491.12.93(1) 1UUI|1|B(11) 1ANR|2|A, 5J1O|2|B, 1QD3|1|A, 1UUD|1|B, 2KX5|1|A, 5J0M|1|B, 1ARJ|7|N, 5J2W|1|B, 1UTS|2|B, 2KDQ|1|B, 2L8H|3|A(0)
NR_all_03265.3NR_all_50423.12.93(1) 5J2W|1|B(11) 1UUI|1|B, 2KX5|1|A, 1ANR|2|A, 5J0M|1|B, 1QD3|1|A, 1UUD|1|B, 2KDQ|1|B, 2L8H|3|A, 1ARJ|7|N, 5J1O|2|B, 1UTS|2|B(0)
NR_all_03265.3NR_all_52900.12.93(1) 1ANR|2|A(11) 5J2W|1|B, 1UUD|1|B, 2KDQ|1|B, 2L8H|3|A, 1ARJ|7|N, 5J1O|2|B, 1UTS|2|B, 1UUI|1|B, 2KX5|1|A, 5J0M|1|B, 1QD3|1|A(0)
NR_all_03265.3NR_all_76462.12.93(1) 1ARJ|7|N(11) 5J0M|1|B, 1QD3|1|A, 5J2W|1|B, 1UUD|1|B, 2KDQ|1|B, 2L8H|3|A, 1ANR|2|A, 5J1O|2|B, 1UTS|2|B, 1UUI|1|B, 2KX5|1|A(0)
NR_all_03265.3NR_all_89498.12.93(1) 5J1O|2|B(11) 1UUD|1|B, 2KDQ|1|B, 2L8H|3|A, 1ARJ|7|N, 5J2W|1|B, 1UTS|2|B, 1UUI|1|B, 2KX5|1|A, 1ANR|2|A, 5J0M|1|B, 1QD3|1|A(0)
NR_all_03265.3NR_all_91774.12.93(1) 1UTS|2|B(11) 5J1O|2|B, 1QD3|1|A, 1UUI|1|B, 2KX5|1|A, 5J0M|1|B, 1ARJ|7|N, 5J2W|1|B, 1UUD|1|B, 2KDQ|1|B, 2L8H|3|A, 1ANR|2|A(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength