Equivalence class NR_all_03265.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5J2W|1|B (rep) | Apical region (29mer) of the HIV-1 TAR RNA element | Human immunodeficiency virus 1 | Intermediate state lying on the pathway of release of Tat from HIV-1 TAR. | Solution NMR | 2016-06-08 | ||||
| 2 | 2KX5|1|A | HIV TAR RNA | Recognition of HIV TAR RNA by peptide mimetic of Tat protein | Solution NMR | 2010-07-07 | |||||
| 3 | 2KDQ|1|B | HIV-1 TAR RNA | Simultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimic of Tat protein | Solution NMR | 2009-06-23 | |||||
| 4 | 1UUI|1|B | 5'-R(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP*CP* CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C)-3' | Human immunodeficiency virus 1 | NMR structure of a synthetic small molecule, rbt158, bound to HIV-1 TAR RNA | Solution NMR | 2004-02-12 | ||||
| 5 | 1QD3|1|A | HIV-1 TAR RNA | Human immunodeficiency virus 1 | HIV-1 TAR RNA/NEOMYCIN B COMPLEX | Solution NMR | 2000-07-12 | ||||
| 6 | 2L8H|3|A | HIV TAR RNA | Chemical probe bound to HIV TAR RNA | Solution NMR | 2011-03-23 | |||||
| 7 | 5J1O|2|B | Apical region (29mer) of the HIV-1 TAR element | Human immunodeficiency virus 1 | Excited state (Bound-like) sampled during RDC restrained Replica-averaged Metadynamics (RAM) simulations of the HIV-1 TAR complexed with cyclic peptide mimetic of Tat | Solution NMR | 2016-06-08 | ||||
| 8 | 1UUD|1|B | RNA (5'-(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP *CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C) -3') | Human immunodeficiency virus 1 | NMR structure of a synthetic small molecule, rbt203, bound to HIV-1 TAR RNA | Solution NMR | 2004-03-15 | ||||
| 9 | 5J0M|1|B | Apical region (29-mer) of the HIV-1 TAR RNA element | Human immunodeficiency virus 1 | Ground state sampled during RDC restrained Replica-averaged Metadynamics (RAM) simulations of the HIV-1 TAR complexed with cyclic peptide mimetic of Tat | Solution NMR | 2016-06-08 | ||||
| 10 | 1UTS|2|B | RNA (5'-(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP *CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C) -3') | Human immunodeficiency virus 1 | Designed HIV-1 TAR Binding Ligand | Solution NMR | 2004-02-12 | ||||
| 11 | 1ARJ|7|N | TAR RNA | ARG-BOUND TAR RNA, NMR | Solution NMR | 1996-11-08 | |||||
| 12 | 1ANR|2|A | RNA REGULATORY ELEMENT TAR | CIS-ACTING RNA REGULATORY ELEMENT (HIV-1 TAR), NMR, 20 STRUCTURES | Solution NMR | 1997-01-11 |
Release history
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 1ANR|2|A | CIS-ACTING RNA REGULATORY ELEMENT (HIV-1 TAR), NMR, 20 STRUCTURES | SOLUTION NMR | 29 | ||
| 2 | 1QD3|1|A | HIV-1 TAR RNA/NEOMYCIN B COMPLEX | SOLUTION NMR | 29 | ||
| 3 | 5J1O|2|B | Excited state (Bound-like) sampled during RDC restrained Replica-averaged Metadynamics (RAM) simulations of the HIV-1 TAR complexed with cyclic peptide mimetic of Tat | SOLUTION NMR | 29 | ||
| 4 | 5J2W|1|B | Intermediate state lying on the pathway of release of Tat from HIV-1 TAR. | SOLUTION NMR | 29 | ||
| 5 | 2KDQ|1|B | Simultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimic of Tat protein | SOLUTION NMR | 29 | ||
| 6 | 5J0M|1|B | Ground state sampled during RDC restrained Replica-averaged Metadynamics (RAM) simulations of the HIV-1 TAR complexed with cyclic peptide mimetic of Tat | SOLUTION NMR | 29 | ||
| 7 | 2KX5|1|A | Recognition of HIV TAR RNA by peptide mimetic of Tat protein | SOLUTION NMR | 29 | ||
| 8 | 2L8H|3|A | Chemical probe bound to HIV TAR RNA | SOLUTION NMR | 29 | ||
| 9 | 1ARJ|7|N | ARG-BOUND TAR RNA, NMR | SOLUTION NMR | 29 | ||
| 10 | 1UUD|1|B | NMR structure of a synthetic small molecule, rbt203, bound to HIV-1 TAR RNA | SOLUTION NMR | 29 | ||
| 11 | 1UUI|1|B | NMR structure of a synthetic small molecule, rbt158, bound to HIV-1 TAR RNA | SOLUTION NMR | 29 | ||
| 12 | 1UTS|2|B | Designed HIV-1 TAR Binding Ligand | SOLUTION NMR | 29 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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