Equivalence class NR_all_12406.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5FLX|1|z (rep) | Internal ribosome entry site | HCV-IRES | Hepacivirus C | Viruses | RF00061 | Mammalian 40S HCV-IRES complex | Electron microscopy | 3.9 | 2015-12-23 |
| 2 | 5A2Q|1|3 | Internal ribosome entry site | HCV IRES | Hepacivirus C | Viruses | RF00061 | Structure of the HCV IRES bound to the human ribosome | Electron microscopy | 3.9 | 2015-07-15 |
| 3 | 7SYW|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt) | Electron microscopy | 3.7 | 2022-07-13 |
| 4 | 7SYX|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII) | Electron microscopy | 3.7 | 2022-07-13 |
| 5 | 7SYN|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII) | Electron microscopy | 4 | 2022-07-13 |
| 6 | 7SYT|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt) | Electron microscopy | 4.4 | 2022-07-13 |
| 7 | 7SYK|1|z | Internal ribosome entry site | HCV IRES | hepatitis C virus genotype 1a | Viruses | RF00061 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII) | Electron microscopy | 4.2 | 2022-07-13 |
| 8 | 5OA3|1|3 | Internal ribosome entry site | IRES mRNA | Hepacivirus C | Viruses | RF00061 | Human 40S-eIF2D-re-initiation complex | Electron microscopy | 4.2 | 2017-08-09 |
| 9 | 7SYG|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII) | Electron microscopy | 4.3 | 2022-07-13 |
| 10 | 7SYU|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII) | Electron microscopy | 4.6 | 2022-07-13 |
| 11 | 7SYI|1|z | Internal ribosome entry site | HCV IRES | Hepacivirus C | Viruses | RF00061 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII) | Electron microscopy | 4.5 | 2022-07-13 |
| 12 | 7SYL|1|z | Internal ribosome entry site | HCV IRES | hepatitis C virus genotype 1a | Viruses | RF00061 | Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII) | Electron microscopy | 4.5 | 2022-07-13 |
| 13 | 7SYH|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII) | Electron microscopy | 4.6 | 2022-07-13 |
| 14 | 7SYM|1|z | Internal ribosome entry site | HCV IRES | Hepatitis C virus (isolate 1) | Viruses | RF00061 | Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII) | Electron microscopy | 4.8 | 2022-07-13 |
| 15 | 7SYJ|1|z | Internal ribosome entry site | HCV IRES | hepatitis C virus genotype 1a | Viruses | RF00061 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII) | Electron microscopy | 4.8 | 2022-07-13 |
| 16 | 4UJD|1|BC | Internal ribosome entry site | HCV-IRES | Hepacivirus C | Viruses | RF00061 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | Electron microscopy | 8.9 | 2014-07-30 |
| 17 | 4UJC|1|AC | Internal ribosome entry site | HCV-IRES | Hepacivirus C | Viruses | RF00061 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | Electron microscopy | 9.5 | 2014-07-30 |
Release history
| Release | 3.239 |
|---|---|
| Date | 2022-07-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_12406.1 | NR_all_23001.1 | 3.239 | (2) 4UJC|1|AC, 4UJD|1|BC | (15) 5A2Q|1|3, 5FLX|1|z, 5OA3|1|3, 7SYG|1|z, 7SYH|1|z, 7SYI|1|z, 7SYJ|1|z, 7SYK|1|z, 7SYL|1|z, 7SYM|1|z, 7SYN|1|z, 7SYT|1|z, 7SYU|1|z, 7SYW|1|z, 7SYX|1|z | (0) |
| NR_all_12406.1 | NR_all_58054.1 | 3.239 | (2) 5A2Q|1|3, 5FLX|1|z | (15) 4UJC|1|AC, 4UJD|1|BC, 5OA3|1|3, 7SYG|1|z, 7SYH|1|z, 7SYI|1|z, 7SYJ|1|z, 7SYK|1|z, 7SYL|1|z, 7SYM|1|z, 7SYN|1|z, 7SYT|1|z, 7SYU|1|z, 7SYW|1|z, 7SYX|1|z | (0) |
| NR_all_12406.1 | NR_all_67426.1 | 3.239 | (1) 5OA3|1|3 | (16) 4UJC|1|AC, 4UJD|1|BC, 5A2Q|1|3, 5FLX|1|z, 7SYG|1|z, 7SYH|1|z, 7SYI|1|z, 7SYJ|1|z, 7SYK|1|z, 7SYL|1|z, 7SYM|1|z, 7SYN|1|z, 7SYT|1|z, 7SYU|1|z, 7SYW|1|z, 7SYX|1|z | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_12406.1 | NR_all_12406.2 | 3.240 | (17) 4UJC|1|AC, 4UJD|1|BC, 5A2Q|1|3, 5FLX|1|z, 5OA3|1|3, 7SYG|1|z, 7SYH|1|z, 7SYI|1|z, 7SYJ|1|z, 7SYK|1|z, 7SYL|1|z, 7SYM|1|z, 7SYN|1|z, 7SYT|1|z, 7SYU|1|z, 7SYW|1|z, 7SYX|1|z | (0) | (1) 7SYV|1|z |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 5OA3|1|3 | Human 40S-eIF2D-re-initiation complex | ELECTRON MICROSCOPY | 4.2 | 186 | |
| 2 | 7SYN|1|z | Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII) | ELECTRON MICROSCOPY | 4 | 162 | |
| 3 | 7SYL|1|z | Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII) | ELECTRON MICROSCOPY | 4.5 | 162 | |
| 4 | 7SYM|1|z | Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII) | ELECTRON MICROSCOPY | 4.8 | 162 | |
| 5 | 7SYX|1|z | Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII) | ELECTRON MICROSCOPY | 3.7 | 188 | |
| 6 | 7SYW|1|z | Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt) | ELECTRON MICROSCOPY | 3.7 | 188 | |
| 7 | 7SYT|1|z | Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt) | ELECTRON MICROSCOPY | 4.4 | 188 | |
| 8 | 7SYU|1|z | Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII) | ELECTRON MICROSCOPY | 4.6 | 188 | |
| 9 | 7SYK|1|z | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII) | ELECTRON MICROSCOPY | 4.2 | 162 | |
| 10 | 5FLX|1|z | Mammalian 40S HCV-IRES complex | ELECTRON MICROSCOPY | 3.9 | 264 | |
| 11 | 5A2Q|1|3 | Structure of the HCV IRES bound to the human ribosome | ELECTRON MICROSCOPY | 3.9 | 257 | |
| 12 | 7SYJ|1|z | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII) | ELECTRON MICROSCOPY | 4.8 | 162 | |
| 13 | 7SYI|1|z | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII) | ELECTRON MICROSCOPY | 4.5 | 162 | |
| 14 | 7SYH|1|z | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII) | ELECTRON MICROSCOPY | 4.6 | 162 | |
| 15 | 7SYG|1|z | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII) | ELECTRON MICROSCOPY | 4.3 | 162 | |
| 16 | 4UJC|1|AC | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 261 | |
| 17 | 4UJD|1|BC | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 261 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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