NR_all_12763.11

Members (26)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	6ZM6\|1\|A (rep)	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA	Electron microscopy	2.59	2021-01-13
2	6ZM5\|1\|A	Large subunit ribosomal RNA	16S mitochondrial rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide	Electron microscopy	2.89	2021-01-13
3	6VMI\|1\|A	Large subunit ribosomal RNA	16s rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)	Electron microscopy	2.96	2020-08-05
4	6VLZ\|1\|A	Large subunit ribosomal RNA	16s rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)	Electron microscopy	2.97	2020-08-05
5	7L20\|1\|A	Large subunit ribosomal RNA	16S rRNA mitochondrial	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.	Electron microscopy	3.15	2021-05-12
6	7A5J\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs	Electron microscopy	3.1	2020-12-23
7	5OOL\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA	Electron microscopy	3.06	2017-09-13
8	7A5H\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1	Electron microscopy	3.3	2020-12-23
9	7L08\|1\|A	Large subunit ribosomal RNA	16S RRNA	Homo sapiens	Mitochondria	RF02541	Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.	Electron microscopy	3.49	2021-05-12
10	6ZSC\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with E-site tRNA	Electron microscopy	3.5	2020-09-16
11	7A5K\|1\|A3	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitoribosome in the post translocation state bound to mtEF-G1	Electron microscopy	3.7	2020-12-23
12	7A5I\|1\|A3	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitoribosome with A- P-and E-site mt-tRNAs	Electron microscopy	3.7	2020-12-23
13	6ZSD\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA	Electron microscopy	3.7	2020-09-16
14	3J9M\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the human mitochondrial ribosome (class 1)	Electron microscopy	3.5	2015-04-15
15	6I9R\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin	Electron microscopy	3.9	2020-07-08
16	5OOM\|1\|A	Large subunit ribosomal RNA	16S ribosomal RNA	Homo sapiens	Mitochondria	RF02541	Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA	Electron microscopy	3.03	2017-09-13
17	6ZSG\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA	Electron microscopy	4	2020-10-14
18	6ZSA\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA	Electron microscopy	4	2020-10-21
19	6ZS9\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with ribosome recycling factor	Electron microscopy	4	2020-10-14
20	3J7Y\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the large ribosomal subunit from human mitochondria	Electron microscopy	3.4	2014-10-15
21	7A5G\|1\|A3	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA	Electron microscopy	4.33	2020-12-23
22	6NU2\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structural insights into unique features of the human mitochondrial ribosome recycling	Electron microscopy	3.9	2019-04-17
23	7A5F\|1\|A3	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs	Electron microscopy	4.4	2020-12-23
24	6ZSB\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA and P-site tRNA	Electron microscopy	4.5	2020-09-16
25	6NU3\|1\|A	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Structural insights into unique features of the human mitochondrial ribosome recycling	Electron microscopy	4.4	2019-04-17
26	6ZSE\|1\|XA	Large subunit ribosomal RNA	16S rRNA	Homo sapiens	Mitochondria	RF02541	Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA	Electron microscopy	5	2020-09-16

Release history

Release	3.178
Date	2021-05-12

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_all_12763.11	NR_all_12763.10	3.178	(24) 6ZSA\|1\|XA, 3J7Y\|1\|A, 6ZSE\|1\|XA, 6NU2\|1\|A, 7A5I\|1\|A3, 6ZM5\|1\|A, 6ZSC\|1\|XA, 5OOL\|1\|A, 7A5F\|1\|A3, 6VLZ\|1\|A, 7A5K\|1\|A3, 6ZS9\|1\|XA, 6I9R\|1\|A, 7A5H\|1\|A, 6ZSB\|1\|XA, 6NU3\|1\|A, 7A5J\|1\|A, 6ZSD\|1\|XA, 6VMI\|1\|A, 3J9M\|1\|A, 6ZSG\|1\|XA, 6ZM6\|1\|A, 5OOM\|1\|A, 7A5G\|1\|A3	(2) 7L08\|1\|A, 7L20\|1\|A	(1) 6ZSF\|1\|XA

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_all_12763.11	NR_all_12763.12	3.179	(26) 6ZSC\|1\|XA, 6ZSB\|1\|XA, 6ZSA\|1\|XA, 6ZS9\|1\|XA, 6ZM6\|1\|A, 6ZM5\|1\|A, 7L20\|1\|A, 6VMI\|1\|A, 7L08\|1\|A, 6VLZ\|1\|A, 7A5K\|1\|A3, 6NU3\|1\|A, 7A5J\|1\|A, 6NU2\|1\|A, 7A5I\|1\|A3, 6I9R\|1\|A, 7A5H\|1\|A, 5OOM\|1\|A, 7A5G\|1\|A3, 5OOL\|1\|A, 7A5F\|1\|A3, 3J9M\|1\|A, 6ZSG\|1\|XA, 3J7Y\|1\|A, 6ZSE\|1\|XA, 6ZSD\|1\|XA	(0)	(1) 7OF3\|1\|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	5OOM\|1\|A	Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA	ELECTRON MICROSCOPY	3.03	1092
2	6ZM6\|1\|A	Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA	ELECTRON MICROSCOPY	2.59	1531
3	6ZM5\|1\|A	Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide	ELECTRON MICROSCOPY	2.89	1534
4	6ZSE\|1\|XA	Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA	ELECTRON MICROSCOPY	5	1501
5	6ZSB\|1\|XA	Human mitochondrial ribosome in complex with mRNA and P-site tRNA	ELECTRON MICROSCOPY	4.5	1501
6	6ZSA\|1\|XA	Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA	ELECTRON MICROSCOPY	4	1501
7	6ZSC\|1\|XA	Human mitochondrial ribosome in complex with E-site tRNA	ELECTRON MICROSCOPY	3.5	1501
8	6ZSD\|1\|XA	Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA	ELECTRON MICROSCOPY	3.7	1501
9	6ZSG\|1\|XA	Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA	ELECTRON MICROSCOPY	4	1501
10	6ZS9\|1\|XA	Human mitochondrial ribosome in complex with ribosome recycling factor	ELECTRON MICROSCOPY	4	1501
11	6I9R\|1\|A	Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin	ELECTRON MICROSCOPY	3.9	1498
12	7A5H\|1\|A	Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1	ELECTRON MICROSCOPY	3.3	1457
13	5OOL\|1\|A	Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA	ELECTRON MICROSCOPY	3.06	1441
14	7A5J\|1\|A	Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs	ELECTRON MICROSCOPY	3.1	1492
15	7A5K\|1\|A3	Structure of the human mitoribosome in the post translocation state bound to mtEF-G1	ELECTRON MICROSCOPY	3.7	1503
16	7A5I\|1\|A3	Structure of the human mitoribosome with A- P-and E-site mt-tRNAs	ELECTRON MICROSCOPY	3.7	1485
17	7A5G\|1\|A3	Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA	ELECTRON MICROSCOPY	4.33	1503
18	7A5F\|1\|A3	Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs	ELECTRON MICROSCOPY	4.4	1503
19	3J9M\|1\|A	Structure of the human mitochondrial ribosome (class 1)	ELECTRON MICROSCOPY	3.5	1472
20	3J7Y\|1\|A	Structure of the large ribosomal subunit from human mitochondria	ELECTRON MICROSCOPY	3.4	1473
21	7L20\|1\|A	Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.	ELECTRON MICROSCOPY	3.15	1527
22	7L08\|1\|A	Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.	ELECTRON MICROSCOPY	3.49	1527
23	6VLZ\|1\|A	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)	ELECTRON MICROSCOPY	2.97	1527
24	6VMI\|1\|A	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)	ELECTRON MICROSCOPY	2.96	1527
25	6NU3\|1\|A	Structural insights into unique features of the human mitochondrial ribosome recycling	ELECTRON MICROSCOPY	4.4	1472
26	6NU2\|1\|A	Structural insights into unique features of the human mitochondrial ribosome recycling	ELECTRON MICROSCOPY	3.9	1472

Equivalence class NR_all_12763.11 Obsolete

Release history

Parents

Children