Equivalence class NR_all_28561.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7QCA|1|L50 (rep) | Large subunit ribosomal RNA | RNA 23S | Spraguea lophii 42_110 | Eukarya | RF02543 | Spraguea lophii ribosome | Electron microscopy | 2.78 | 2022-11-30 |
| 2 | 8BR3|1|L50 | Large subunit ribosomal RNA | RNA 28S | Spraguea lophii 42_110 | Eukarya | RF02543 | Spraguea lophii ribosome in the closed conformation by cryo sub tomogram averaging | Electron microscopy | 9.55 | 2023-04-12 |
| 3 | 7QJH|1|K50 | Large subunit ribosomal RNA | RNA 28S | Spraguea lophii 42_110 | Eukarya | RF02543 | Spraguea lophii ribosome dimer | Electron microscopy | 10 | 2022-12-28 |
| 4 | 7QJH|1|L50 | Large subunit ribosomal RNA | RNA 28S | Spraguea lophii 42_110 | Eukarya | RF02543 | Spraguea lophii ribosome dimer | Electron microscopy | 10 | 2022-12-28 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_28561.2 | NR_all_28561.1 | 3.278 | (3) 7QCA|1|L50, 7QJH|1|L50, 7QJH|1|K50 | (1) 8BR3|1|L50 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_28561.2 | NR_all_60484.1 | 3.288 | (4) 8BR3|1|L50, 7QJH|1|L50, 7QJH|1|K50, 7QCA|1|L50 | (0) | (3) 8P5D|1|L50, 8P60|1|L50, 8P60|1|K50 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 8BR3|1|L50 | Spraguea lophii ribosome in the closed conformation by cryo sub tomogram averaging | ELECTRON MICROSCOPY | 9.55 | 2499 |
| 2 | 7QJH|1|L50 | Spraguea lophii ribosome dimer | ELECTRON MICROSCOPY | 10 | 2499 |
| 3 | 7QCA|1|L50 | Spraguea lophii ribosome | ELECTRON MICROSCOPY | 2.78 | 2499 |
| 4 | 7QJH|1|K50 | Spraguea lophii ribosome dimer | ELECTRON MICROSCOPY | 10 | 2499 |
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