RNA 3D Hub //

Equivalence class NR_all_33014.3 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16LQP|1|SA+ 6LQP|1|5A+ 6LQP|1|3A (rep)Small subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)Electron microscopy3.22020-09-16
26KE6|1|SA+ 6KE6|1|5A+ 6KE6|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF018463.4 angstrom cryo-EM structure of yeast 90S small subunit preribosomeElectron microscopy3.42020-08-05
36ZQG|1|D3Small subunit ribosomal RNA18S rRNA, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-CElectron microscopy3.52020-09-23
46LQU|1|SA+ 6LQU|1|5A+ 6LQU|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)Electron microscopy3.72020-09-16
56ZQD|1|D3Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1Electron microscopy3.82020-09-23
67AJU|1|D3Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiae S288CEukaryaRF01960Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)Electron microscopy3.82020-12-30
76LQS|1|SASmall subunit ribosomal RNA18S pre-rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)Electron microscopy3.82020-09-16
86LQQ|1|SA+ 6LQQ|1|5A+ 6LQQ|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)Electron microscopy4.12020-09-16
96ZQB|1|D3+ 6ZQB|1|D2+ 6ZQB|1|D4Small subunit ribosomal RNA + U3 small nucleolar RNA18S rRNA, 5ETS RNA, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2Electron microscopy3.92020-09-23
106ZQC|1|D3Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1Electron microscopy3.82020-09-23
115WLC|1|L1+ 5WLC|1|L0+ 5WLC|1|L2Small subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846The complete structure of the small subunit processomeElectron microscopy3.82017-09-27
125WYK|1|SA+ 5WYK|1|5A+ 5WYK|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S ribosomal RNA, 5ETS RNA, U3 RNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)Electron microscopy4.52017-03-29
137AJT|1|D3Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiae S288CEukaryaRF01960Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)Electron microscopy4.62020-12-30
146LQT|1|SA+ 6LQT|1|3A+ 6LQT|1|5ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, U3 snoRNA, 5' ETSSaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State E)Electron microscopy4.92020-09-16
156LQV|1|SA+ 6LQV|1|3A+ 6LQV|1|5ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, U3 snoRNA, 5' ETSSaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1)Electron microscopy4.82020-09-16
166ZQF|1|D3Small subunit ribosomal RNA18S rRNA, U3 snoRNA, 5ETS RNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)Electron microscopy4.92020-09-23
175TZS|1|1Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Architecture of the yeast small subunit processomeElectron microscopy5.12016-12-21
186ZQE|1|D3Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)Electron microscopy7.12020-09-23
196LQR|1|SA+ 6LQR|1|5A+ 6LQR|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State C)Electron microscopy8.62020-09-16
205WYJ|1|SA+ 5WYJ|1|5A+ 5WYJ|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S ribosomal RNA, 5ETS RNA, U3 RNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)Electron microscopy8.72017-03-29

Release history

Release3.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.198
Date2020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-29

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_33014.3NR_all_33014.23.159(18) 6LQT|1|SA+6LQT|1|3A+6LQT|1|5A, 6LQS|1|SA, 6LQR|1|SA+6LQR|1|5A+6LQR|1|3A, 6LQQ|1|SA+6LQQ|1|5A+6LQQ|1|3A, 6LQP|1|SA+6LQP|1|5A+6LQP|1|3A, 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A, 5WYK|1|SA+5WYK|1|5A+5WYK|1|3A, 5WYJ|1|SA+5WYJ|1|5A+5WYJ|1|3A, 5WLC|1|L1+5WLC|1|L0+5WLC|1|L2, 6ZQG|1|D3, 5TZS|1|1, 6ZQF|1|D3, 6ZQE|1|D3, 6ZQD|1|D3, 6ZQC|1|D3, 6ZQB|1|D3+6ZQB|1|D2+6ZQB|1|D4, 6LQV|1|SA+6LQV|1|3A+6LQV|1|5A, 6LQU|1|SA+6LQU|1|5A+6LQU|1|3A(2) 7AJT|1|D3, 7AJU|1|D3(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_33014.3NR_all_33014.43.199(20) 5WYK|1|SA+5WYK|1|5A+5WYK|1|3A, 6LQR|1|SA+6LQR|1|5A+6LQR|1|3A, 6LQV|1|SA+6LQV|1|3A+6LQV|1|5A, 6ZQE|1|D3, 7AJU|1|D3, 5WYJ|1|SA+5WYJ|1|5A+5WYJ|1|3A, 6LQQ|1|SA+6LQQ|1|5A+6LQQ|1|3A, 6LQU|1|SA+6LQU|1|5A+6LQU|1|3A, 6ZQD|1|D3, 7AJT|1|D3, 5WLC|1|L1+5WLC|1|L0+5WLC|1|L2, 6LQP|1|SA+6LQP|1|5A+6LQP|1|3A, 6LQT|1|SA+6LQT|1|3A+6LQT|1|5A, 6ZQC|1|D3, 6ZQG|1|D3, 5TZS|1|1, 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A, 6LQS|1|SA, 6ZQB|1|D3+6ZQB|1|D2+6ZQB|1|D4, 6ZQF|1|D3(0) (4) 7D4I|1|SA, 7D63|1|SA+7D63|1|5A+7D63|1|3A, 7D5T|1|SA, 7D5S|1|SA+7D5S|1|5A+7D5S|1|3A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15WYJ|1|SA+5WYJ|1|5A+5WYJ|1|3ACryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)ELECTRON MICROSCOPY8.71115
25WYK|1|SA+5WYK|1|5A+5WYK|1|3ACryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)ELECTRON MICROSCOPY4.51000
35TZS|1|1Architecture of the yeast small subunit processomeELECTRON MICROSCOPY5.1515
45WLC|1|L1+5WLC|1|L0+5WLC|1|L2The complete structure of the small subunit processomeELECTRON MICROSCOPY3.81025
56LQU|1|SA+6LQU|1|5A+6LQU|1|3ACryo-EM structure of 90S small subunit preribosomes in transition states (State A1)ELECTRON MICROSCOPY3.71242
66LQV|1|SA+6LQV|1|3A+6LQV|1|5ACryo-EM structure of 90S small subunit preribosomes in transition states (State C1)ELECTRON MICROSCOPY4.8950
76LQR|1|SA+6LQR|1|5A+6LQR|1|3ACryo-EM structure of 90S small subunit preribosomes in transition states (State C)ELECTRON MICROSCOPY8.61283
86LQQ|1|SA+6LQQ|1|5A+6LQQ|1|3ACryo-EM structure of 90S small subunit preribosomes in transition states (State B)ELECTRON MICROSCOPY4.11323
96KE6|1|SA+6KE6|1|5A+6KE6|1|3A3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosomeELECTRON MICROSCOPY3.41310
106LQP|1|SA+6LQP|1|5A+6LQP|1|3ACryo-EM structure of 90S small subunit preribosomes in transition states (State A)ELECTRON MICROSCOPY3.21325
116ZQB|1|D3+6ZQB|1|D2+6ZQB|1|D4Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2ELECTRON MICROSCOPY3.91198
126ZQC|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1ELECTRON MICROSCOPY3.81327
137AJT|1|D3Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)ELECTRON MICROSCOPY4.61327
146LQS|1|SACryo-EM structure of 90S small subunit preribosomes in transition states (State D)ELECTRON MICROSCOPY3.81249
156LQT|1|SA+6LQT|1|3A+6LQT|1|5ACryo-EM structure of 90S small subunit preribosomes in transition states (State E)ELECTRON MICROSCOPY4.91155
167AJU|1|D3Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)ELECTRON MICROSCOPY3.81409
176ZQD|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1ELECTRON MICROSCOPY3.81409
186ZQE|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)ELECTRON MICROSCOPY7.11447
196ZQF|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)ELECTRON MICROSCOPY4.91392
206ZQG|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-CELECTRON MICROSCOPY3.51387
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