BGSU RNA Site //

Equivalence class NR_all_45609.5 Current

#IFECompound(s)RNA source organismTitleMethodResolutionDate
16TNU|1|m (rep)A-site tRNA, mRNASaccharomyces cerevisiaeYeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.12020-04-22
27RR5|1|AA-tRNA, mRNAStructure of ribosomal complex bound with Rbg1/Tma46ELECTRON MICROSCOPY3.232021-11-10
36HD7|1|AtRNASaccharomyces cerevisiaeCryo-EM structure of the ribosome-NatA complexELECTRON MICROSCOPY3.42018-12-19
45MC6|1|mA-site tRNA, mRNASaccharomyces cerevisiaeCryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeELECTRON MICROSCOPY3.82017-01-18
57NRC|1|SmtRNA (76-MER), RNA (5'-R(P*AP*UP*GP*AP*AP*A)-3')Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5AELECTRON MICROSCOPY3.92021-05-05
65GAK|1|AThe A-site tRNA was modeled based on an E. coli tRNA-LysSaccharomyces cerevisiaeYeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AELECTRON MICROSCOPY3.882016-02-24

Release history

Release3.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.217
Date2021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_45609.5NR_all_45609.43.204(5) 7NRC|1|Sm, 6TNU|1|m, 6HD7|1|A, 5MC6|1|m, 5GAK|1|A(1) 7RR5|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16TNU|1|mYeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.176
27NRC|1|SmStructure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5AELECTRON MICROSCOPY3.976
35MC6|1|mCryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeELECTRON MICROSCOPY3.876
47RR5|1|AStructure of ribosomal complex bound with Rbg1/Tma46ELECTRON MICROSCOPY3.2376
56HD7|1|ACryo-EM structure of the ribosome-NatA complexELECTRON MICROSCOPY3.476
65GAK|1|AYeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AELECTRON MICROSCOPY3.8876