Equivalence class NR_all_45609.5 Current
| # | IFE | Standardized name | Molecule | Organism | Domain | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6TNU|1|m (rep) | Transfer RNA | A-site tRNA, mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. | Electron microscopy | 3.1 | 2020-04-22 |
| 2 | 7RR5|1|A | Transfer RNA | A-tRNA, mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of ribosomal complex bound with Rbg1/Tma46 | Electron microscopy | 3.23 | 2021-11-10 |
| 3 | 6HD7|1|A | Transfer RNA | tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Cryo-EM structure of the ribosome-NatA complex | Electron microscopy | 3.4 | 2018-12-19 |
| 4 | 5MC6|1|m | Transfer RNA | A-site tRNA, mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae | Electron microscopy | 3.8 | 2017-01-18 |
| 5 | 7NRC|1|Sm | Transfer RNA | tRNA (76-MER), RNA (5'-R(P*AP*UP*GP*AP*AP*A)-3') | Saccharomyces cerevisiae S288C | Eukarya | RF00005 | Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A | Electron microscopy | 3.9 | 2021-05-05 |
| 6 | 5GAK|1|A | Transfer RNA | The A-site tRNA was modeled based on an E. coli tRNA-Lys | Saccharomyces cerevisiae | Eukarya | RF00005 | Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A | Electron microscopy | 3.88 | 2016-02-24 |
Release history
| Release | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6TNU|1|m | Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. | ELECTRON MICROSCOPY | 3.1 | 76 |
| 2 | 7NRC|1|Sm | Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A | ELECTRON MICROSCOPY | 3.9 | 76 |
| 3 | 5MC6|1|m | Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae | ELECTRON MICROSCOPY | 3.8 | 76 |
| 4 | 7RR5|1|A | Structure of ribosomal complex bound with Rbg1/Tma46 | ELECTRON MICROSCOPY | 3.23 | 76 |
| 5 | 6HD7|1|A | Cryo-EM structure of the ribosome-NatA complex | ELECTRON MICROSCOPY | 3.4 | 76 |
| 6 | 5GAK|1|A | Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A | ELECTRON MICROSCOPY | 3.88 | 76 |