NR_all_46995.9

Members (37)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Å	Date
1	5VYC\|1\|i2 (rep)	Small subunit ribosomal RNA	Human 18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.	X-ray diffraction	6	2017-07-19
2	5VYC\|1\|i3	Small subunit ribosomal RNA	Human 18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.	X-ray diffraction	6	2017-07-19
3	5VYC\|1\|i5	Small subunit ribosomal RNA	Human 18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.	X-ray diffraction	6	2017-07-19
4	5VYC\|1\|i1	Small subunit ribosomal RNA	Human 18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.	X-ray diffraction	6	2017-07-19
5	5VYC\|1\|i6	Small subunit ribosomal RNA	Human 18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.	X-ray diffraction	6	2017-07-19
6	5VYC\|1\|i4	Small subunit ribosomal RNA	Human 18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.	X-ray diffraction	6	2017-07-19
7	6QZP\|1\|S2	Small subunit ribosomal RNA	18S rRNA (1740-MER)	Homo sapiens	Eukarya	RF01960	High-resolution cryo-EM structure of the human 80S ribosome	Electron microscopy	2.9	2019-04-24
8	6EK0\|1\|S2		18S ribosomal RNA	Homo sapiens	Eukarya		High-resolution cryo-EM structure of the human 80S ribosome	Electron microscopy	2.9	2018-01-24
9	6Y2L\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of human ribosome in POST state	Electron microscopy	3	2020-04-15
10	6OM0\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs	Electron microscopy	3.1	2019-06-19
11	6OLE\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs	Electron microscopy	3.1	2019-06-19
12	6Y0G\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of human ribosome in classical-PRE state	Electron microscopy	3.2	2020-04-15
13	6OLG\|1\|B1	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)	Electron microscopy	3.4	2019-06-19
14	6OLI\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)	Electron microscopy	3.5	2019-06-19
15	6Y57\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of human ribosome in hybrid-PRE state	Electron microscopy	3.5	2020-04-15
16	6G18\|1\|2	Small subunit ribosomal RNA	pre-18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - State C	Electron microscopy	3.6	2018-06-06
17	6G5I\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - State R	Electron microscopy	3.5	2018-06-06
18	4UG0\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	STRUCTURE OF THE HUMAN 80S RIBOSOME	Electron microscopy	3.6	2015-06-10
19	6IP8\|1\|2m	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)	Electron microscopy	3.9	2019-05-29
20	6IP5\|1\|2m	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)	Electron microscopy	3.9	2019-05-29
21	6G5H\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature	Electron microscopy	3.6	2018-06-06
22	6OM7\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs	Electron microscopy	3.7	2019-06-19
23	6OLZ\|1\|B1	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA	Electron microscopy	3.9	2019-06-19
24	5AJ0\|1\|B1	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo electron microscopy of actively translating human polysomes (POST state).	Electron microscopy	3.5	2015-05-20
25	6OLF\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs	Electron microscopy	3.9	2019-06-19
26	5A2Q\|1\|2	Small subunit ribosomal RNA	18S RRNA	Homo sapiens	Eukarya	RF01960	Structure of the HCV IRES bound to the human ribosome	Electron microscopy	3.9	2015-07-15
27	6G51\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - State D	Electron microscopy	4.1	2018-06-06
28	6G4S\|1\|2	Small subunit ribosomal RNA	pre-18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - State B	Electron microscopy	4	2018-06-06
29	6IP6\|1\|2m	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)	Electron microscopy	4.5	2019-05-29
30	5OA3\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human 40S-eIF2D-re-initiation complex	Electron microscopy	4.2	2017-08-09
31	5LKS\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure-function insights reveal the human ribosome as a cancer target for antibiotics	Electron microscopy	3.6	2017-04-26
32	6G53\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - State E	Electron microscopy	4.5	2018-06-06
33	6G4W\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Cryo-EM structure of a late human pre-40S ribosomal subunit - State A	Electron microscopy	4.5	2018-06-06
34	4V6X\|1\|B2	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Structure of the human 80S ribosome	Electron microscopy	5	2014-07-09
35	5T2C\|1\|AA	Small subunit ribosomal RNA	18S rRNA	Homo sapiens	Eukarya	RF01960	CryoEM structure of the human ribosome at 3.6 Angstrom resolution	Electron microscopy	3.6	2017-01-25
36	6FEC\|1\|A	Small subunit ribosomal RNA	18S ribosomal RNA	Homo sapiens	Eukarya	RF01960	Human cap-dependent 48S pre-initiation complex	Electron microscopy	6.3	2018-03-14
37	5A8L\|1\|B	Small subunit ribosomal RNA	HUMAN 18S RIBOSOMAL RNA	Homo sapiens	Eukarya	RF01960	Human eRF1 and the hCMV nascent peptide in the translation termination complex	Electron microscopy	3.8	2015-12-02

Release history

Release	3.122	3.123	3.124	3.125	3.126	3.127	3.128	3.129	3.130	3.131	3.132	3.133	3.134	3.135
Date	2020-04-15	2020-04-22	2020-04-29	2020-05-06	2020-05-13	2020-05-20	2020-05-27	2020-06-03	2020-06-10	2020-06-17	2020-06-24	2020-07-01	2020-07-08	2020-07-15

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_all_46995.9	NR_all_46995.8	3.122	(34) 6IP6\|1\|2m, 5A2Q\|1\|2, 5VYC\|1\|i6, 6IP5\|1\|2m, 5VYC\|1\|i5, 4V6X\|1\|B2, 6QZP\|1\|S2, 6G5I\|1\|2, 5VYC\|1\|i4, 4UG0\|1\|S2, 6OM7\|1\|S2, 6G5H\|1\|2, 5VYC\|1\|i3, 6OM0\|1\|S2, 6G53\|1\|2, 5VYC\|1\|i2, 6OLZ\|1\|B1, 6G51\|1\|2, 5VYC\|1\|i1, 6OLI\|1\|S2, 6G4W\|1\|2, 5T2C\|1\|AA, 6OLG\|1\|B1, 6G4S\|1\|2, 5OA3\|1\|2, 6OLF\|1\|S2, 6G18\|1\|2, 5LKS\|1\|S2, 6OLE\|1\|S2, 6FEC\|1\|A, 5AJ0\|1\|B1, 6IP8\|1\|2m, 6EK0\|1\|S2, 5A8L\|1\|B	(3) 6Y0G\|1\|S2, 6Y57\|1\|S2, 6Y2L\|1\|S2	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_all_46995.9	NR_all_46995.10	3.136	(37) 5VYC\|1\|i6, 6G5H\|1\|2, 6OLI\|1\|S2, 5LKS\|1\|S2, 5VYC\|1\|i5, 6G53\|1\|2, 6OLG\|1\|B1, 6Y57\|1\|S2, 5AJ0\|1\|B1, 6G51\|1\|2, 6OLF\|1\|S2, 6Y2L\|1\|S2, 5A8L\|1\|B, 5VYC\|1\|i4, 6G4W\|1\|2, 6OLE\|1\|S2, 6Y0G\|1\|S2, 5A2Q\|1\|2, 5VYC\|1\|i3, 6G4S\|1\|2, 6IP8\|1\|2m, 6QZP\|1\|S2, 4V6X\|1\|B2, 5VYC\|1\|i2, 6G18\|1\|2, 6IP6\|1\|2m, 6OM7\|1\|S2, 4UG0\|1\|S2, 5VYC\|1\|i1, 6FEC\|1\|A, 6IP5\|1\|2m, 6OM0\|1\|S2, 5T2C\|1\|AA, 6EK0\|1\|S2, 6G5I\|1\|2, 6OLZ\|1\|B1, 5OA3\|1\|2	(0)	(2) 6ZOJ\|1\|2, 6ZOL\|1\|2

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	6OM0\|1\|S2	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs	ELECTRON MICROSCOPY	3.1	1680
2	6OM7\|1\|S2	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs	ELECTRON MICROSCOPY	3.7	1680
3	6G18\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - State C	ELECTRON MICROSCOPY	3.6	1658
4	6G5I\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - State R	ELECTRON MICROSCOPY	3.5	1657
5	6G5H\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature	ELECTRON MICROSCOPY	3.6	1665
6	5OA3\|1\|2	Human 40S-eIF2D-re-initiation complex	ELECTRON MICROSCOPY	4.2	1661
7	5A2Q\|1\|2	Structure of the HCV IRES bound to the human ribosome	ELECTRON MICROSCOPY	3.9	1665
8	4V6X\|1\|B2	Structure of the human 80S ribosome	ELECTRON MICROSCOPY	5	1861
9	5VYC\|1\|i6	Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.	X-RAY DIFFRACTION	6	1742
10	5VYC\|1\|i2	Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.	X-RAY DIFFRACTION	6	1742
11	5VYC\|1\|i1	Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.	X-RAY DIFFRACTION	6	1742
12	5VYC\|1\|i5	Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.	X-RAY DIFFRACTION	6	1742
13	5VYC\|1\|i3	Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.	X-RAY DIFFRACTION	6	1742
14	5VYC\|1\|i4	Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.	X-RAY DIFFRACTION	6	1742
15	6FEC\|1\|A	Human cap-dependent 48S pre-initiation complex	ELECTRON MICROSCOPY	6.3	1776
16	6Y2L\|1\|S2	Structure of human ribosome in POST state	ELECTRON MICROSCOPY	3	1713
17	6QZP\|1\|S2	High-resolution cryo-EM structure of the human 80S ribosome	ELECTRON MICROSCOPY	2.9	1707
18	6EK0\|1\|S2	High-resolution cryo-EM structure of the human 80S ribosome	ELECTRON MICROSCOPY	2.9	1706
19	6OLI\|1\|S2	Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)	ELECTRON MICROSCOPY	3.5	1680
20	6OLE\|1\|S2	Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs	ELECTRON MICROSCOPY	3.1	1680
21	6OLF\|1\|S2	Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs	ELECTRON MICROSCOPY	3.9	1680
22	6Y57\|1\|S2	Structure of human ribosome in hybrid-PRE state	ELECTRON MICROSCOPY	3.5	1658
23	6Y0G\|1\|S2	Structure of human ribosome in classical-PRE state	ELECTRON MICROSCOPY	3.2	1697
24	5AJ0\|1\|B1	Cryo electron microscopy of actively translating human polysomes (POST state).	ELECTRON MICROSCOPY	3.5	1708
25	6OLG\|1\|B1	Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)	ELECTRON MICROSCOPY	3.4	1708
26	6OLZ\|1\|B1	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA	ELECTRON MICROSCOPY	3.9	1708
27	5T2C\|1\|AA	CryoEM structure of the human ribosome at 3.6 Angstrom resolution	ELECTRON MICROSCOPY	3.6	1742
28	4UG0\|1\|S2	STRUCTURE OF THE HUMAN 80S RIBOSOME	ELECTRON MICROSCOPY	3.6	1742
29	5LKS\|1\|S2	Structure-function insights reveal the human ribosome as a cancer target for antibiotics	ELECTRON MICROSCOPY	3.6	1742
30	6IP5\|1\|2m	Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)	ELECTRON MICROSCOPY	3.9	1742
31	6IP6\|1\|2m	Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)	ELECTRON MICROSCOPY	4.5	1742
32	6IP8\|1\|2m	Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)	ELECTRON MICROSCOPY	3.9	1742
33	5A8L\|1\|B	Human eRF1 and the hCMV nascent peptide in the translation termination complex	ELECTRON MICROSCOPY	3.8	67
34	6G53\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - State E	ELECTRON MICROSCOPY	4.5	1659
35	6G4S\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - State B	ELECTRON MICROSCOPY	4	1613
36	6G4W\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - State A	ELECTRON MICROSCOPY	4.5	1563
37	6G51\|1\|2	Cryo-EM structure of a late human pre-40S ribosomal subunit - State D	ELECTRON MICROSCOPY	4.1	1659

Equivalence class NR_all_46995.9 Obsolete

Release history

Parents

Children