Equivalence class NR_all_46995.9 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 5VYC|1|i2 (rep) | Human 18S ribosomal RNA | Homo sapiens | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-RAY DIFFRACTION | 6 | 2017-07-19 |
| 2 | 5VYC|1|i3 | Human 18S ribosomal RNA | Homo sapiens | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-RAY DIFFRACTION | 6 | 2017-07-19 |
| 3 | 5VYC|1|i5 | Human 18S ribosomal RNA | Homo sapiens | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-RAY DIFFRACTION | 6 | 2017-07-19 |
| 4 | 5VYC|1|i1 | Human 18S ribosomal RNA | Homo sapiens | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-RAY DIFFRACTION | 6 | 2017-07-19 |
| 5 | 5VYC|1|i6 | Human 18S ribosomal RNA | Homo sapiens | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-RAY DIFFRACTION | 6 | 2017-07-19 |
| 6 | 5VYC|1|i4 | Human 18S ribosomal RNA | Homo sapiens | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-RAY DIFFRACTION | 6 | 2017-07-19 |
| 7 | 6QZP|1|S2 | 18S rRNA (1740-MER) | Homo sapiens | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 2019-04-24 |
| 8 | 6EK0|1|S2 | 18S ribosomal RNA | Homo sapiens | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 2018-01-24 |
| 9 | 6Y2L|1|S2 | 18S ribosomal RNA | Homo sapiens | Structure of human ribosome in POST state | ELECTRON MICROSCOPY | 3 | 2020-04-15 |
| 10 | 6OM0|1|S2 | 18S ribosomal RNA | Homo sapiens | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 2019-06-19 |
| 11 | 6OLE|1|S2 | 18S ribosomal RNA | Homo sapiens | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 2019-06-19 |
| 12 | 6Y0G|1|S2 | 18S ribosomal RNA | Homo sapiens | Structure of human ribosome in classical-PRE state | ELECTRON MICROSCOPY | 3.2 | 2020-04-15 |
| 13 | 6OLG|1|B1 | 18S ribosomal RNA | Homo sapiens | Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) | ELECTRON MICROSCOPY | 3.4 | 2019-06-19 |
| 14 | 6OLI|1|S2 | 18S ribosomal RNA | Homo sapiens | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC) | ELECTRON MICROSCOPY | 3.5 | 2019-06-19 |
| 15 | 6Y57|1|S2 | 18S ribosomal RNA | Homo sapiens | Structure of human ribosome in hybrid-PRE state | ELECTRON MICROSCOPY | 3.5 | 2020-04-15 |
| 16 | 6G18|1|2 | pre-18S ribosomal RNA | Homo sapiens | Cryo-EM structure of a late human pre-40S ribosomal subunit - State C | ELECTRON MICROSCOPY | 3.6 | 2018-06-06 |
| 17 | 6G5I|1|2 | 18S ribosomal RNA | Homo sapiens | Cryo-EM structure of a late human pre-40S ribosomal subunit - State R | ELECTRON MICROSCOPY | 3.5 | 2018-06-06 |
| 18 | 4UG0|1|S2 | 18S ribosomal RNA | Homo sapiens | STRUCTURE OF THE HUMAN 80S RIBOSOME | ELECTRON MICROSCOPY | 3.6 | 2015-06-10 |
| 19 | 6IP8|1|2m | 18S ribosomal RNA | Homo sapiens | Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv) | ELECTRON MICROSCOPY | 3.9 | 2019-05-29 |
| 20 | 6IP5|1|2m | 18S ribosomal RNA | Homo sapiens | Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii) | ELECTRON MICROSCOPY | 3.9 | 2019-05-29 |
| 21 | 6G5H|1|2 | 18S ribosomal RNA | Homo sapiens | Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature | ELECTRON MICROSCOPY | 3.6 | 2018-06-06 |
| 22 | 6OM7|1|S2 | 18S ribosomal RNA | Homo sapiens | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs | ELECTRON MICROSCOPY | 3.7 | 2019-06-19 |
| 23 | 6OLZ|1|B1 | 18S ribosomal RNA | Homo sapiens | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA | ELECTRON MICROSCOPY | 3.9 | 2019-06-19 |
| 24 | 5AJ0|1|B1 | 18S ribosomal RNA | Homo sapiens | Cryo electron microscopy of actively translating human polysomes (POST state). | ELECTRON MICROSCOPY | 3.5 | 2015-05-20 |
| 25 | 6OLF|1|S2 | 18S ribosomal RNA | Homo sapiens | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs | ELECTRON MICROSCOPY | 3.9 | 2019-06-19 |
| 26 | 5A2Q|1|2 | 18S RRNA | Homo sapiens | Structure of the HCV IRES bound to the human ribosome | ELECTRON MICROSCOPY | 3.9 | 2015-07-15 |
| 27 | 6G51|1|2 | 18S ribosomal RNA | Homo sapiens | Cryo-EM structure of a late human pre-40S ribosomal subunit - State D | ELECTRON MICROSCOPY | 4.1 | 2018-06-06 |
| 28 | 6G4S|1|2 | pre-18S ribosomal RNA | Homo sapiens | Cryo-EM structure of a late human pre-40S ribosomal subunit - State B | ELECTRON MICROSCOPY | 4 | 2018-06-06 |
| 29 | 6IP6|1|2m | 18S ribosomal RNA | Homo sapiens | Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii) | ELECTRON MICROSCOPY | 4.5 | 2019-05-29 |
| 30 | 5OA3|1|2 | 18S ribosomal RNA | Homo sapiens | Human 40S-eIF2D-re-initiation complex | ELECTRON MICROSCOPY | 4.2 | 2017-08-09 |
| 31 | 5LKS|1|S2 | 18S ribosomal RNA | Homo sapiens | Structure-function insights reveal the human ribosome as a cancer target for antibiotics | ELECTRON MICROSCOPY | 3.6 | 2017-04-26 |
| 32 | 6G53|1|2 | 18S ribosomal RNA | Homo sapiens | Cryo-EM structure of a late human pre-40S ribosomal subunit - State E | ELECTRON MICROSCOPY | 4.5 | 2018-06-06 |
| 33 | 6G4W|1|2 | 18S ribosomal RNA | Homo sapiens | Cryo-EM structure of a late human pre-40S ribosomal subunit - State A | ELECTRON MICROSCOPY | 4.5 | 2018-06-06 |
| 34 | 4V6X|1|B2 | 18S ribosomal RNA | Homo sapiens | Structure of the human 80S ribosome | ELECTRON MICROSCOPY | 5 | 2014-07-09 |
| 35 | 5T2C|1|AA | 18S rRNA | Homo sapiens | CryoEM structure of the human ribosome at 3.6 Angstrom resolution | ELECTRON MICROSCOPY | 3.6 | 2017-01-25 |
| 36 | 6FEC|1|A | 18S ribosomal RNA | Homo sapiens | Human cap-dependent 48S pre-initiation complex | ELECTRON MICROSCOPY | 6.3 | 2018-03-14 |
| 37 | 5A8L|1|B | HUMAN 18S RIBOSOMAL RNA | Homo sapiens | Human eRF1 and the hCMV nascent peptide in the translation termination complex | ELECTRON MICROSCOPY | 3.8 | 2015-12-02 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_46995.9 | NR_all_46995.8 | 3.122 | (34) 4UG0|1|S2, 6OM7|1|S2, 5VYC|1|i3, 6G5H|1|2, 6OM0|1|S2, 6G53|1|2, 5VYC|1|i2, 6OLZ|1|B1, 6G51|1|2, 5VYC|1|i1, 6OLI|1|S2, 6G4W|1|2, 5T2C|1|AA, 6OLG|1|B1, 6G4S|1|2, 5OA3|1|2, 6OLF|1|S2, 6G18|1|2, 5LKS|1|S2, 6OLE|1|S2, 6FEC|1|A, 5AJ0|1|B1, 6IP8|1|2m, 6EK0|1|S2, 5A8L|1|B, 6IP6|1|2m, 5VYC|1|i6, 5A2Q|1|2, 6IP5|1|2m, 5VYC|1|i5, 4V6X|1|B2, 6QZP|1|S2, 6G5I|1|2, 5VYC|1|i4 | (3) 6Y0G|1|S2, 6Y57|1|S2, 6Y2L|1|S2 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_46995.9 | NR_all_46995.10 | 3.136 | (37) 6G5H|1|2, 6OLI|1|S2, 5LKS|1|S2, 5VYC|1|i6, 6G53|1|2, 6OLG|1|B1, 6Y57|1|S2, 5AJ0|1|B1, 5VYC|1|i5, 6G51|1|2, 6OLF|1|S2, 6Y2L|1|S2, 5A8L|1|B, 5VYC|1|i4, 6G4W|1|2, 6OLE|1|S2, 6Y0G|1|S2, 5A2Q|1|2, 5VYC|1|i3, 6G4S|1|2, 6IP8|1|2m, 6QZP|1|S2, 4V6X|1|B2, 5VYC|1|i2, 6G18|1|2, 6IP6|1|2m, 6OM7|1|S2, 4UG0|1|S2, 5VYC|1|i1, 6FEC|1|A, 6IP5|1|2m, 6OM0|1|S2, 5T2C|1|AA, 6EK0|1|S2, 6G5I|1|2, 6OLZ|1|B1, 5OA3|1|2 | (0) | (2) 6ZOL|1|2, 6ZOJ|1|2 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6OM0|1|S2 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 1680 |
| 2 | 6OM7|1|S2 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs | ELECTRON MICROSCOPY | 3.7 | 1680 |
| 3 | 6G18|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State C | ELECTRON MICROSCOPY | 3.6 | 1658 |
| 4 | 6G5I|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State R | ELECTRON MICROSCOPY | 3.5 | 1657 |
| 5 | 6G5H|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature | ELECTRON MICROSCOPY | 3.6 | 1665 |
| 6 | 5OA3|1|2 | Human 40S-eIF2D-re-initiation complex | ELECTRON MICROSCOPY | 4.2 | 1661 |
| 7 | 5A2Q|1|2 | Structure of the HCV IRES bound to the human ribosome | ELECTRON MICROSCOPY | 3.9 | 1665 |
| 8 | 4V6X|1|B2 | Structure of the human 80S ribosome | ELECTRON MICROSCOPY | 5 | 1861 |
| 9 | 5VYC|1|i6 | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-RAY DIFFRACTION | 6 | 1742 |
| 10 | 5VYC|1|i2 | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-RAY DIFFRACTION | 6 | 1742 |
| 11 | 5VYC|1|i1 | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-RAY DIFFRACTION | 6 | 1742 |
| 12 | 5VYC|1|i5 | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-RAY DIFFRACTION | 6 | 1742 |
| 13 | 5VYC|1|i3 | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-RAY DIFFRACTION | 6 | 1742 |
| 14 | 5VYC|1|i4 | Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. | X-RAY DIFFRACTION | 6 | 1742 |
| 15 | 6FEC|1|A | Human cap-dependent 48S pre-initiation complex | ELECTRON MICROSCOPY | 6.3 | 1776 |
| 16 | 6Y2L|1|S2 | Structure of human ribosome in POST state | ELECTRON MICROSCOPY | 3 | 1713 |
| 17 | 6QZP|1|S2 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 1707 |
| 18 | 6EK0|1|S2 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 1706 |
| 19 | 6OLI|1|S2 | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC) | ELECTRON MICROSCOPY | 3.5 | 1680 |
| 20 | 6OLE|1|S2 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 1680 |
| 21 | 6OLF|1|S2 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs | ELECTRON MICROSCOPY | 3.9 | 1680 |
| 22 | 6Y57|1|S2 | Structure of human ribosome in hybrid-PRE state | ELECTRON MICROSCOPY | 3.5 | 1658 |
| 23 | 6Y0G|1|S2 | Structure of human ribosome in classical-PRE state | ELECTRON MICROSCOPY | 3.2 | 1697 |
| 24 | 5AJ0|1|B1 | Cryo electron microscopy of actively translating human polysomes (POST state). | ELECTRON MICROSCOPY | 3.5 | 1708 |
| 25 | 6OLG|1|B1 | Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) | ELECTRON MICROSCOPY | 3.4 | 1708 |
| 26 | 6OLZ|1|B1 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA | ELECTRON MICROSCOPY | 3.9 | 1708 |
| 27 | 5T2C|1|AA | CryoEM structure of the human ribosome at 3.6 Angstrom resolution | ELECTRON MICROSCOPY | 3.6 | 1742 |
| 28 | 4UG0|1|S2 | STRUCTURE OF THE HUMAN 80S RIBOSOME | ELECTRON MICROSCOPY | 3.6 | 1742 |
| 29 | 5LKS|1|S2 | Structure-function insights reveal the human ribosome as a cancer target for antibiotics | ELECTRON MICROSCOPY | 3.6 | 1742 |
| 30 | 6IP5|1|2m | Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii) | ELECTRON MICROSCOPY | 3.9 | 1742 |
| 31 | 6IP6|1|2m | Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii) | ELECTRON MICROSCOPY | 4.5 | 1742 |
| 32 | 6IP8|1|2m | Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv) | ELECTRON MICROSCOPY | 3.9 | 1742 |
| 33 | 5A8L|1|B | Human eRF1 and the hCMV nascent peptide in the translation termination complex | ELECTRON MICROSCOPY | 3.8 | 67 |
| 34 | 6G53|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State E | ELECTRON MICROSCOPY | 4.5 | 1659 |
| 35 | 6G4S|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State B | ELECTRON MICROSCOPY | 4 | 1613 |
| 36 | 6G4W|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State A | ELECTRON MICROSCOPY | 4.5 | 1563 |
| 37 | 6G51|1|2 | Cryo-EM structure of a late human pre-40S ribosomal subunit - State D | ELECTRON MICROSCOPY | 4.1 | 1659 |