BGSU RNA Site //

Equivalence class NR_all_49177.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
14XK0|1|A (rep)RNA (5'-(*UP*GP*GP*GP*GP*U)-3')synthetic constructSyntheticCrystal structure of a tetramolecular RNA G-quadruplex in potassiumX-ray diffraction1.082015-02-11

Release history

Release2.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.45
Date2015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-16

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_49177.1NR_1.5_74981.12.46(1) 4XK0|1|A(0) (17) 4RNE|1|H, 4RNE|1|G, 4RNE|1|F, 4RNE|1|E, 4RNE|1|D, 4RNE|1|C, 4RNE|1|B, 4RNE|1|A, 4RKV|1|B, 4RKV|1|A, 4RJ1|1|B, 4RJ1|1|A, 1J8G|1|D, 1J8G|1|C, 1J8G|1|B, 1J8G|1|A, 4XK0|1|C
NR_all_49177.1NR_2.0_74981.12.46(1) 4XK0|1|A(0) (17) 4RNE|1|G, 4RNE|1|F, 4RNE|1|E, 4RNE|1|D, 4RNE|1|C, 4RNE|1|B, 4RNE|1|A, 4RKV|1|B, 4RKV|1|A, 4RJ1|1|B, 4RJ1|1|A, 1J8G|1|D, 1J8G|1|C, 1J8G|1|B, 1J8G|1|A, 4XK0|1|C, 4RNE|1|H
NR_all_49177.1NR_2.5_74981.12.46(1) 4XK0|1|A(0) (17) 4RNE|1|F, 4RNE|1|E, 4RNE|1|D, 4RNE|1|C, 4RNE|1|B, 4RNE|1|A, 4RKV|1|B, 4RKV|1|A, 4RJ1|1|B, 4RJ1|1|A, 1J8G|1|D, 1J8G|1|C, 1J8G|1|B, 4XK0|1|C, 1J8G|1|A, 4RNE|1|H, 4RNE|1|G
NR_all_49177.1NR_20.0_74981.12.46(1) 4XK0|1|A(0) (17) 4RNE|1|E, 4RNE|1|D, 4RNE|1|C, 4RNE|1|B, 4RNE|1|A, 4RKV|1|B, 4RKV|1|A, 4RJ1|1|B, 4RJ1|1|A, 1J8G|1|D, 1J8G|1|C, 1J8G|1|B, 1J8G|1|A, 4XK0|1|C, 4RNE|1|H, 4RNE|1|G, 4RNE|1|F
NR_all_49177.1NR_3.0_74981.12.46(1) 4XK0|1|A(0) (17) 4RNE|1|D, 4RNE|1|C, 4RNE|1|B, 4RNE|1|A, 4RKV|1|B, 4RKV|1|A, 4RJ1|1|B, 4RJ1|1|A, 1J8G|1|D, 1J8G|1|C, 1J8G|1|B, 1J8G|1|A, 4XK0|1|C, 4RNE|1|H, 4RNE|1|G, 4RNE|1|F, 4RNE|1|E
NR_all_49177.1NR_3.5_74981.12.46(1) 4XK0|1|A(0) (17) 4RNE|1|C, 4RNE|1|B, 4RNE|1|A, 4RKV|1|B, 4RKV|1|A, 4RJ1|1|B, 4RJ1|1|A, 1J8G|1|D, 1J8G|1|C, 1J8G|1|B, 1J8G|1|A, 4XK0|1|C, 4RNE|1|H, 4RNE|1|G, 4RNE|1|F, 4RNE|1|E, 4RNE|1|D
NR_all_49177.1NR_4.0_74981.12.46(1) 4XK0|1|A(0) (17) 4RNE|1|B, 4RNE|1|A, 4RKV|1|B, 4RKV|1|A, 4RJ1|1|B, 4RJ1|1|A, 1J8G|1|D, 1J8G|1|C, 1J8G|1|B, 1J8G|1|A, 4XK0|1|C, 4RNE|1|H, 4RNE|1|G, 4RNE|1|F, 4RNE|1|E, 4RNE|1|D, 4RNE|1|C
NR_all_49177.1NR_all_74981.12.46(1) 4XK0|1|A(0) (21) 4RJ1|1|A, 1RAU|1|D, 1RAU|1|C, 1RAU|1|B, 4XK0|1|C, 1RAU|1|A, 4RNE|1|H, 1J8G|1|D, 4RNE|1|G, 1J8G|1|C, 4RNE|1|F, 1J8G|1|B, 4RNE|1|E, 1J8G|1|A, 4RNE|1|D, 4RNE|1|C, 4RNE|1|B, 4RNE|1|A, 4RKV|1|B, 4RKV|1|A, 4RJ1|1|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14XK0|1|ACrystal structure of a tetramolecular RNA G-quadruplex in potassiumX-RAY DIFFRACTION1.086