BGSU RNA Site //

Equivalence class NR_all_51266.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
12BU1|1|S (rep)5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *5BU*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (5BRU -5) COMPLEXX-ray diffraction2.22005-08-18
22C4Z|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*SUR *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-ray diffraction2.62006-01-05
32C4Y|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-ray diffraction2.682006-01-05
42C4Q|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *PYO*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2ONE -5) COMPLEXX-ray diffraction2.382005-11-07
52BU1|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *5BU*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (5BRU -5) COMPLEXX-ray diffraction2.22005-08-18
62C4Q|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *PYO*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2ONE -5) COMPLEXX-ray diffraction2.382005-11-07
71ZDK|1|SRNA (5'-R(P*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3')STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-ray diffraction2.861998-12-07
82C4Z|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*SUR *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-ray diffraction2.62006-01-05
92IZ9|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*U ONEP *AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (4ONE -5) COMPLEXX-ray diffraction2.852006-07-27
102BQ5|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2 (N87AE89K mutant) - RNA hairpin complexX-ray diffraction2.912006-03-22
112BNY|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2 (N87A mutant) - RNA hairpin complexX-ray diffraction32006-03-22
122C51|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *GP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (G -5) COMPLEXX-ray diffraction2.82006-01-05
132C4Y|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-ray diffraction2.682006-01-05
142BQ5|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2 (N87AE89K mutant) - RNA hairpin complexX-ray diffraction2.912006-03-22
151ZDI|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.71997-04-21
162IZ8|1|RRNA, (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*CP*UP*CP* AP*CP*CP*CP*AP*UP*GP*U)-3')Escherichia virus MS2VirusesMS2-RNA HAIRPIN (C-7) COMPLEXX-ray diffraction3.32006-07-27
171AQ3|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-ray diffraction2.81997-12-24
181AQ4|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')Escherichia virus MS2VirusesSTRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-ray diffraction31997-12-24
192B2G|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-ray diffraction3.022006-05-09
202B2E|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-ray diffraction3.152006-05-09
211ZDH|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*U P*GP*U)-3')synthetic constructSyntheticMS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.71997-04-21
222IZM|1|R5'-R(*AP*CP*AP*UP*GP*CP*GP*GP*AP*UP *CP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (C-10) COMPLEXX-ray diffraction2.72007-07-03
231ZDI|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.71997-04-21
241ZDH|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*U P*GP*U)-3')synthetic constructSyntheticMS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.71997-04-21
252IZM|1|S5'-R(*AP*CP*AP*UP*GP*CP*GP*GP*AP*UP *CP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (C-10) COMPLEXX-ray diffraction2.72007-07-03
262IZ8|1|SRNA, (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*CP*UP*CP* AP*CP*CP*CP*AP*UP*GP*U)-3')Escherichia virus MS2VirusesMS2-RNA HAIRPIN (C-7) COMPLEXX-ray diffraction3.32006-07-27
272BNY|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2 (N87A mutant) - RNA hairpin complexX-ray diffraction32006-03-22
282C50|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *AP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (A -5) COMPLEXX-ray diffraction2.652006-01-05
292C51|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *GP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (G -5) COMPLEXX-ray diffraction2.82006-01-05
302C50|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *AP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (A -5) COMPLEXX-ray diffraction2.652006-01-05
311AQ4|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')Escherichia virus MS2VirusesSTRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-ray diffraction31997-12-24
322IZ9|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*U ONEP *AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (4ONE -5) COMPLEXX-ray diffraction2.852006-07-27
332B2E|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-ray diffraction3.152006-05-09
342B2G|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-ray diffraction3.022006-05-09
351ZDK|1|RRNA (5'-R(P*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3')STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-ray diffraction2.861998-12-07
361AQ3|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-ray diffraction2.81997-12-24

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.922.932.942.952.962.972.982.992.1002.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.1502.1512.1522.1532.1542.1552.1562.1572.158
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-092016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-172017-11-242017-12-012017-12-08

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_51266.1NR_all_51266.23.0(36) 1ZDH|1|S, 2B2G|1|S, 2C4Q|1|S, 2C51|1|S, 1ZDH|1|R, 2B2G|1|R, 2C4Q|1|R, 2C51|1|R, 1AQ4|1|S, 2B2E|1|S, 2BU1|1|S, 2C50|1|S, 2IZM|1|S, 1AQ4|1|R, 2B2E|1|R, 2BU1|1|R, 2C50|1|R, 2IZM|1|R, 1AQ3|1|S, 1ZDK|1|S, 2BQ5|1|S, 2C4Z|1|S, 2IZ9|1|S, 1AQ3|1|R, 1ZDK|1|R, 2BQ5|1|R, 2C4Z|1|R, 2IZ9|1|R, 1ZDI|1|S, 2BNY|1|S, 2C4Y|1|S, 2IZ8|1|S, 1ZDI|1|R, 2BNY|1|R, 2C4Y|1|R, 2IZ8|1|R(0) (2) 1KUO|1|S, 1KUO|1|R

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
12B2E|1|SRNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-RAY DIFFRACTION3.1514
22B2E|1|RRNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-RAY DIFFRACTION3.1516
32B2G|1|SMS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-RAY DIFFRACTION3.0215
42C51|1|SMS2-RNA HAIRPIN (G -5) COMPLEXX-RAY DIFFRACTION2.813
52IZM|1|SMS2-RNA HAIRPIN (C-10) COMPLEXX-RAY DIFFRACTION2.713
62IZ8|1|SMS2-RNA HAIRPIN (C-7) COMPLEXX-RAY DIFFRACTION3.313
72IZ8|1|RMS2-RNA HAIRPIN (C-7) COMPLEXX-RAY DIFFRACTION3.316
82C4Q|1|RMS2-RNA HAIRPIN (2ONE -5) COMPLEXX-RAY DIFFRACTION2.3816
92BU1|1|RMS2-RNA HAIRPIN (5BRU -5) COMPLEXX-RAY DIFFRACTION2.216
102C4Q|1|SMS2-RNA HAIRPIN (2ONE -5) COMPLEXX-RAY DIFFRACTION2.3816
112BU1|1|SMS2-RNA HAIRPIN (5BRU -5) COMPLEXX-RAY DIFFRACTION2.216
122C50|1|SMS2-RNA HAIRPIN (A -5) COMPLEXX-RAY DIFFRACTION2.6513
132B2G|1|RMS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-RAY DIFFRACTION3.0216
142IZM|1|RMS2-RNA HAIRPIN (C-10) COMPLEXX-RAY DIFFRACTION2.713
151AQ3|1|SBACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.812
161AQ4|1|SSTRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-RAY DIFFRACTION314
171ZDI|1|SRNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.713
181ZDK|1|SSTRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-RAY DIFFRACTION2.8619
191ZDH|1|SMS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.713
201ZDK|1|RSTRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-RAY DIFFRACTION2.8619
211ZDH|1|RMS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.713
221ZDI|1|RRNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.716
231AQ4|1|RSTRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-RAY DIFFRACTION316
241AQ3|1|RBACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.816
252C51|1|RMS2-RNA HAIRPIN (G -5) COMPLEXX-RAY DIFFRACTION2.815
262C50|1|RMS2-RNA HAIRPIN (A -5) COMPLEXX-RAY DIFFRACTION2.6514
272BNY|1|RMS2 (N87A mutant) - RNA hairpin complexX-RAY DIFFRACTION315
282BNY|1|SMS2 (N87A mutant) - RNA hairpin complexX-RAY DIFFRACTION313
292C4Z|1|SMS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-RAY DIFFRACTION2.611
302C4Y|1|SMS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-RAY DIFFRACTION2.6812
312BQ5|1|SMS2 (N87AE89K mutant) - RNA hairpin complexX-RAY DIFFRACTION2.9117
322BQ5|1|RMS2 (N87AE89K mutant) - RNA hairpin complexX-RAY DIFFRACTION2.9119
332C4Y|1|RMS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-RAY DIFFRACTION2.6816
342C4Z|1|RMS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-RAY DIFFRACTION2.615
352IZ9|1|RMS2-RNA HAIRPIN (4ONE -5) COMPLEXX-RAY DIFFRACTION2.8514
362IZ9|1|SMS2-RNA HAIRPIN (4ONE -5) COMPLEXX-RAY DIFFRACTION2.8514