Equivalence class NR_all_65147.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4DR7|1|V (rep) | 5'-R(*UP*UP*UP*U)-3' | Thermus thermophilus | Bacteria | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound | X-ray diffraction | 3.75 | 2012-11-14 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2014-12-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_65147.1 | NR_20.0_85948.1 | 2.1 | (1) 4DR7|1|V | (0) | (8) 1NB7|1|E, 3IE1|1|F, 3IE1|1|E, 3S4G|1|C+3S4G|1|B, 2QQP|1|R, 3IE1|1|H, 1NB7|1|F, 3IE1|1|G |
| NR_all_65147.1 | NR_4.0_85948.1 | 2.1 | (1) 4DR7|1|V | (0) | (7) 1NB7|1|E, 3IE1|1|F, 3IE1|1|E, 2QQP|1|R, 3IE1|1|H, 1NB7|1|F, 3IE1|1|G |
| NR_all_65147.1 | NR_all_85948.1 | 2.1 | (1) 4DR7|1|V | (0) | (8) 3IE1|1|G, 1NB7|1|F, 1NB7|1|E, 3IE1|1|F, 3S4G|1|C+3S4G|1|B, 3IE1|1|E, 3IE1|1|H, 2QQP|1|R |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4DR7|1|V | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound | X-RAY DIFFRACTION | 3.75 | 4 |