Equivalence class NR_all_71217.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6ZMI|1|CC (rep) | Transfer RNA | tRNA | Homo sapiens | Eukarya | RF00005 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex | Electron microscopy | 2.6 | 2020-08-19 |
| 2 | 6ZM7|1|CC | Transfer RNA | tRNA | Homo sapiens | Eukarya | RF00005 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex | Electron microscopy | 2.7 | 2020-07-29 |
| 3 | 6ZVH|1|x | Transfer RNA | E-site tRNA | Homo sapiens | Eukarya | RF00005 | EDF1-ribosome complex | Electron microscopy | 2.9 | 2020-08-19 |
| 4 | 6Z6N|1|CC | Transfer RNA | tRNA | Homo sapiens | Eukarya | RF00005 | Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1) | Electron microscopy | 2.9 | 2020-07-29 |
| 5 | 6ZME|1|CC | Transfer RNA | tRNA | Homo sapiens | Eukarya | RF00005 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex | Electron microscopy | 3 | 2020-08-12 |
| 6 | 7QVP|1|CC | Transfer RNA | tNRA E/E | Homo sapiens | Eukarya | RF00005 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | Electron microscopy | 3 | 2022-10-12 |
| 7 | 6Z6L|1|CC | Transfer RNA | tRNA | Homo sapiens | Eukarya | RF00005 | Cryo-EM structure of human CCDC124 bound to 80S ribosomes | Electron microscopy | 3 | 2020-07-29 |
| 8 | 7OLD|1|5 | Transfer RNA | pe/E tRNA | Chaetomium thermophilum var. thermophilum DSM 1495 | Eukarya | RF00005 | Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state | Electron microscopy | 3 | 2022-01-26 |
| 9 | 6ZMO|1|CC | Transfer RNA | tRNA | Homo sapiens | Eukarya | RF00005 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex | Electron microscopy | 3.1 | 2020-08-19 |
Release history
| Release | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6ZVH|1|x | EDF1-ribosome complex | ELECTRON MICROSCOPY | 2.9 | 75 |
| 2 | 6ZMO|1|CC | SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex | ELECTRON MICROSCOPY | 3.1 | 75 |
| 3 | 6ZMI|1|CC | SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex | ELECTRON MICROSCOPY | 2.6 | 75 |
| 4 | 6ZM7|1|CC | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex | ELECTRON MICROSCOPY | 2.7 | 75 |
| 5 | 6ZME|1|CC | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex | ELECTRON MICROSCOPY | 3 | 75 |
| 6 | 6Z6L|1|CC | Cryo-EM structure of human CCDC124 bound to 80S ribosomes | ELECTRON MICROSCOPY | 3 | 75 |
| 7 | 7QVP|1|CC | Human collided disome (di-ribosome) stalled on XBP1 mRNA | ELECTRON MICROSCOPY | 3 | 75 |
| 8 | 6Z6N|1|CC | Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1) | ELECTRON MICROSCOPY | 2.9 | 75 |
| 9 | 7OLD|1|5 | Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state | ELECTRON MICROSCOPY | 3 | 75 |