BGSU RNA Site //

Equivalence class NR_all_80570.3 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
15CEU|1|D (rep)RNA (5'-R(P*AP*A)-3')Crystal structure of Rv2837c complexed with 5'-pApAX-ray diffraction2.362015-12-23
25CEU|1|CRNA (5'-R(P*AP*A)-3')Crystal structure of Rv2837c complexed with 5'-pApAX-ray diffraction2.362015-12-23
34EJT|1|G5'-R(*AP*A)-3'Staphylococcus epidermidis TcaR in complex with RNAX-ray diffraction32013-06-05
43J0O|1|wmRNA fragmentOryctolagus cuniculusEukaryaCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2Electron microscopy92011-11-16
53J0Q|1|wmRNA fragmentOryctolagus cuniculusEukaryaCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2Electron microscopy10.62011-11-16
63J0P|1|wmRNA fragmentOryctolagus cuniculusEukaryaCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1Electron microscopy10.62011-11-16
73J0L|1|wmRNA fragmentOryctolagus cuniculusEukaryaCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1Electron microscopy9.82011-11-16

Release history

Release2.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.73
Date2015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-29

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_80570.3NR_all_80570.22.55(5) 4EJT|1|G, 3J0Q|1|w, 3J0P|1|w, 3J0O|1|w, 3J0L|1|w(2) 5CEU|1|D, 5CEU|1|C(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_80570.3NR_2.5_80570.42.74(2) 5CEU|1|C, 5CEU|1|D(5) 3J0P|1|w, 3J0O|1|w, 3J0L|1|w, 4EJT|1|G, 3J0Q|1|w(1) 5JJU|1|C
NR_all_80570.3NR_20.0_80570.42.74(7) 3J0L|1|w, 4EJT|1|G, 3J0Q|1|w, 5CEU|1|D, 3J0P|1|w, 3J0O|1|w, 5CEU|1|C(0) (1) 5JJU|1|C
NR_all_80570.3NR_3.0_80570.42.74(3) 4EJT|1|G, 5CEU|1|C, 5CEU|1|D(4) 3J0O|1|w, 3J0L|1|w, 3J0Q|1|w, 3J0P|1|w(1) 5JJU|1|C
NR_all_80570.3NR_3.5_80570.42.74(3) 4EJT|1|G, 5CEU|1|C, 5CEU|1|D(4) 3J0O|1|w, 3J0L|1|w, 3J0Q|1|w, 3J0P|1|w(1) 5JJU|1|C
NR_all_80570.3NR_4.0_80570.42.74(3) 4EJT|1|G, 5CEU|1|C, 5CEU|1|D(4) 3J0O|1|w, 3J0L|1|w, 3J0Q|1|w, 3J0P|1|w(1) 5JJU|1|C
NR_all_80570.3NR_all_80570.42.74(7) 3J0O|1|w, 5CEU|1|C, 3J0L|1|w, 4EJT|1|G, 3J0Q|1|w, 3J0P|1|w, 5CEU|1|D(0) (1) 5JJU|1|C

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13J0O|1|wCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2ELECTRON MICROSCOPY92
23J0L|1|wCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1ELECTRON MICROSCOPY9.82
33J0Q|1|wCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2ELECTRON MICROSCOPY10.62
43J0P|1|wCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1ELECTRON MICROSCOPY10.62
54EJT|1|GStaphylococcus epidermidis TcaR in complex with RNAX-RAY DIFFRACTION32
65CEU|1|DCrystal structure of Rv2837c complexed with 5'-pApAX-RAY DIFFRACTION2.362
75CEU|1|CCrystal structure of Rv2837c complexed with 5'-pApAX-RAY DIFFRACTION2.362