RNA 3D Hub //

Equivalence class NR_all_93855.16 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17QI4|1|AA (rep)Small subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome at 2.2 A resolutionElectron microscopy2.212022-07-13
27P2E|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycinElectron microscopy2.42022-07-27
36ZM6|1|AASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAElectron microscopy2.592021-01-13
47QI5|1|AA12S mitochondrial rRNAHomo sapiensHuman mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolutionElectron microscopy2.632023-07-05
57PNX|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation aElectron microscopy2.762022-06-15
68ANY|1|AA12S mitochondrial rRNAHomo sapiensHuman mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNAElectron microscopy2.852023-08-16
78CSS|1|A12S mitochondrial rRNAHomo sapiensMitochondriaHuman mitochondrial small subunit assembly intermediate (State D)Electron microscopy2.362022-12-14
86ZM5|1|AASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideElectron microscopy2.892021-01-13
97QI6|1|AA12S mitochondrial rRNAHomo sapiensHuman mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolutionElectron microscopy2.982023-05-17
106VMI|1|AASmall subunit ribosomal RNA12s rRNAHomo sapiensMitochondriaRF00177Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)Electron microscopy2.962020-08-05
117PO3|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome small subunitElectron microscopy2.922022-06-15
127PO1|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Initiation complex of human mitochondrial ribosome small subunit with IF3Electron microscopy2.922022-06-15
137PO0|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3Electron microscopy2.92022-06-15
146VLZ|1|AASmall subunit ribosomal RNA12s rRNAHomo sapiensMitochondriaRF00177Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)Electron microscopy2.972020-08-05
156RW4|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3Electron microscopy2.972020-06-03
168OIS|1|AA12S rRNAHomo sapiens28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNAElectron microscopy32023-06-14
178CSR|1|A12S mitochondrial rRNAHomo sapiensMitochondriaHuman mitochondrial small subunit assembly intermediate (State C)Electron microscopy2.542022-12-14
188OIR|1|AA12S rRNAHomo sapiens55S human mitochondrial ribosome with mtRF1 and P-site tRNAElectron microscopy3.12023-06-14
197PO2|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Initiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNAElectron microscopy3.092022-06-15
207PNY|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation bElectron microscopy3.062022-06-15
217PNZ|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation cElectron microscopy3.092022-06-15
226RW5|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3Electron microscopy3.142020-06-03
238CST|1|A12S mitochondrial rRNAHomo sapiensMitochondriaHuman mitochondrial small subunit assembly intermediate (State E)Electron microscopy2.852022-12-14
248CSQ|1|A12S mitochondrial rRNAHomo sapiensMitochondriaHuman mitochondrial small subunit assembly intermediate (State B)Electron microscopy2.542022-12-14
258CSU|1|A12S mitochondrial rRNAHomo sapiensMitochondriaHuman mitochondrial small subunit assembly intermediate (State C*)Electron microscopy3.032022-12-14
267L08|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.Electron microscopy3.492021-05-12
278CSP|1|A12S mitochondrial rRNAHomo sapiensMitochondriaHuman mitochondrial small subunit assembly intermediate (State A)Electron microscopy2.662022-12-14
287A5I|1|A6Small subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structure of the human mitoribosome with A- P-and E-site mt-tRNAsElectron microscopy3.72020-12-23
297A5K|1|A6Small subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structure of the human mitoribosome in the post translocation state bound to mtEF-G1Electron microscopy3.72020-12-23
306ZSC|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with E-site tRNAElectron microscopy3.52020-09-16
316ZSD|1|AASmall subunit ribosomal RNA12SrRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNAElectron microscopy3.72020-09-16
323J9M|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structure of the human mitochondrial ribosome (class 1)Electron microscopy3.52015-04-15
337OG4|1|AASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with P/E-tRNAElectron microscopy3.82021-06-23
346ZSA|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNAElectron microscopy42020-10-21
356ZSG|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNAElectron microscopy42020-10-14
366ZS9|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with ribosome recycling factorElectron microscopy42020-10-14
377A5G|1|A6Small subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNAElectron microscopy4.332020-12-23
386NU2|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structural insights into unique features of the human mitochondrial ribosome recyclingElectron microscopy3.92019-04-17
397A5F|1|A6Small subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structure of the stalled human mitoribosome with P- and E-site mt-tRNAsElectron microscopy4.42020-12-23
406ZSB|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA and P-site tRNAElectron microscopy4.52020-09-16
416NU3|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structural insights into unique features of the human mitochondrial ribosome recyclingElectron microscopy4.42019-04-17
426ZSE|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNAElectron microscopy52020-09-16

Release history

Release3.2963.2973.2983.2993.3003.301
Date2023-08-162023-08-232023-08-302023-09-062023-09-132023-09-20

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_93855.16NR_all_93855.153.296(41) 6ZSC|1|AA, 6ZSB|1|AA, 6ZSA|1|AA, 6ZS9|1|AA, 6ZM6|1|AA, 8OIS|1|AA, 6ZM5|1|AA, 8OIR|1|AA, 8CSU|1|A, 6VMI|1|AA, 8CST|1|A, 6VLZ|1|AA, 8CSS|1|A, 6RW5|1|A, 8CSR|1|A, 6RW4|1|A, 8CSQ|1|A, 6NU3|1|AA, 8CSP|1|A, 6NU2|1|AA, 7QI6|1|AA, 3J9M|1|AA, 7QI5|1|AA, 7QI4|1|AA, 7PO3|1|A, 7PO2|1|A, 7PO1|1|A, 7PO0|1|A, 7PNZ|1|A, 7PNY|1|A, 7PNX|1|A, 7P2E|1|A, 7OG4|1|AA, 7L08|1|AA, 7A5K|1|A6, 7A5I|1|A6, 7A5G|1|A6, 7A5F|1|A6, 6ZSG|1|AA, 6ZSE|1|AA, 6ZSD|1|AA(1) 8ANY|1|AA(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17PNY|1|AAssembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation bELECTRON MICROSCOPY3.06946
26NU3|1|AAStructural insights into unique features of the human mitochondrial ribosome recyclingELECTRON MICROSCOPY4.4923
36NU2|1|AAStructural insights into unique features of the human mitochondrial ribosome recyclingELECTRON MICROSCOPY3.9923
46VLZ|1|AAStructure of the human mitochondrial ribosome-EF-G1 complex (ClassI)ELECTRON MICROSCOPY2.97944
56VMI|1|AAStructure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)ELECTRON MICROSCOPY2.96944
67L08|1|AACryo-EM structure of the human 55S mitoribosome-RRFmt complex.ELECTRON MICROSCOPY3.49944
73J9M|1|AAStructure of the human mitochondrial ribosome (class 1)ELECTRON MICROSCOPY3.5923
87A5I|1|A6Structure of the human mitoribosome with A- P-and E-site mt-tRNAsELECTRON MICROSCOPY3.7928
97A5G|1|A6Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNAELECTRON MICROSCOPY4.33928
107A5F|1|A6Structure of the stalled human mitoribosome with P- and E-site mt-tRNAsELECTRON MICROSCOPY4.4928
117A5K|1|A6Structure of the human mitoribosome in the post translocation state bound to mtEF-G1ELECTRON MICROSCOPY3.7928
126ZSE|1|AAHuman mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNAELECTRON MICROSCOPY5927
136ZS9|1|AAHuman mitochondrial ribosome in complex with ribosome recycling factorELECTRON MICROSCOPY4927
146ZSC|1|AAHuman mitochondrial ribosome in complex with E-site tRNAELECTRON MICROSCOPY3.5927
157OG4|1|AAHuman mitochondrial ribosome in complex with P/E-tRNAELECTRON MICROSCOPY3.8924
166ZSB|1|AAHuman mitochondrial ribosome in complex with mRNA and P-site tRNAELECTRON MICROSCOPY4.5927
176ZSD|1|AAHuman mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNAELECTRON MICROSCOPY3.7927
186ZSA|1|AAHuman mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNAELECTRON MICROSCOPY4927
196ZSG|1|AAHuman mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNAELECTRON MICROSCOPY4927
206ZM5|1|AAHuman mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideELECTRON MICROSCOPY2.89954
216ZM6|1|AAHuman mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAELECTRON MICROSCOPY2.59954
227QI5|1|AAHuman mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolutionELECTRON MICROSCOPY2.63949
238ANY|1|AAHuman mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNAELECTRON MICROSCOPY2.85949
247QI4|1|AAHuman mitochondrial ribosome at 2.2 A resolutionELECTRON MICROSCOPY2.21949
257QI6|1|AAHuman mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolutionELECTRON MICROSCOPY2.98949
268OIR|1|AA55S human mitochondrial ribosome with mtRF1 and P-site tRNAELECTRON MICROSCOPY3.1950
278OIS|1|AA28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNAELECTRON MICROSCOPY3950
287PO2|1|AInitiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNAELECTRON MICROSCOPY3.09950
297PO3|1|AHuman mitochondrial ribosome small subunitELECTRON MICROSCOPY2.92950
307PO1|1|AInitiation complex of human mitochondrial ribosome small subunit with IF3ELECTRON MICROSCOPY2.92950
316RW5|1|AStructure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3ELECTRON MICROSCOPY3.14950
326RW4|1|AStructure of human mitochondrial 28S ribosome in complex with mitochondrial IF3ELECTRON MICROSCOPY2.97950
337P2E|1|AHuman mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycinELECTRON MICROSCOPY2.4959
347PNZ|1|AAssembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation cELECTRON MICROSCOPY3.09946
357PO0|1|AAssembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3ELECTRON MICROSCOPY2.9946
367PNX|1|AAssembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation aELECTRON MICROSCOPY2.76946
378CST|1|AHuman mitochondrial small subunit assembly intermediate (State E)ELECTRON MICROSCOPY2.85886
388CSS|1|AHuman mitochondrial small subunit assembly intermediate (State D)ELECTRON MICROSCOPY2.36844
398CSR|1|AHuman mitochondrial small subunit assembly intermediate (State C)ELECTRON MICROSCOPY2.54853
408CSU|1|AHuman mitochondrial small subunit assembly intermediate (State C*)ELECTRON MICROSCOPY3.03881
418CSQ|1|AHuman mitochondrial small subunit assembly intermediate (State B)ELECTRON MICROSCOPY2.54802
428CSP|1|AHuman mitochondrial small subunit assembly intermediate (State A)ELECTRON MICROSCOPY2.66737
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