BGSU RNA Site //

Equivalence class NR_all_95556.4 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
14V8U|1|CV (rep)Transfer RNAMRNA, RNAThermus thermophilusBacteriaRF00005Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.72014-07-09
24V8U|1|AVTransfer RNAMRNA, RNAThermus thermophilusBacteriaRF00005Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.72014-07-09
34V90|1|AVTransfer RNARNA (77-MER), 5'-R(*UP*AP*AP*AP*AP*AP*UP*GP*UP)-3'Thermus thermophilusBacteriaRF00005Thermus thermophilus RibosomeX-RAY DIFFRACTION2.952014-07-09
43BBV|1|zTransfer RNAtRNA(Phe)Thermus thermophilusBacteriaRF00005The tRNA(phe) fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complexELECTRON MICROSCOPY102008-10-21
54V68|1|AWTransfer RNAE-SITE TRNAThermus thermophilusBacteriaRF00005T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.ELECTRON MICROSCOPY6.42014-07-09
64WT8|1|D3Transfer RNAA site tNA, E site tNAThermus thermophilusBacteriaRF00005Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-RAY DIFFRACTION3.42015-01-21
75AA0|1|BETransfer RNAtRNA chain 2Thermus thermophilusBacteriaRF00005Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCPELECTRON MICROSCOPY52015-10-14
85AA0|1|BCTransfer RNAtRNA chain 1Thermus thermophilusBacteriaRF00005Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCPELECTRON MICROSCOPY52015-10-14
93J9Z|1|S7Transfer RNAE-tRNAThermus thermophilusBacteriaRF00005Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GELECTRON MICROSCOPY3.62015-07-01
104V5A|1|AV+ 4V5A|1|AXTransfer RNAP-SITE RNA ASL-PHE, MRNAsynthetic constructSyntheticRF00005Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.52014-07-09
114V5A|1|CV+ 4V5A|1|CXTransfer RNAP-SITE RNA ASL-PHE, MRNAsynthetic constructSyntheticRF00005Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.52014-07-09
124WT8|1|C3Transfer RNAA site tNA, E site tNAThermus thermophilusBacteriaRF00005Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-RAY DIFFRACTION3.42015-01-21
134WT8|1|C2Transfer RNAA site tNA, E site tNA, mRNAThermus thermophilusBacteriaRF00005Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-RAY DIFFRACTION3.42015-01-21
145AA0|1|BDTransfer RNAtRNA chain 2Thermus thermophilusBacteriaRF00005Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCPELECTRON MICROSCOPY52015-10-14

Release history

Release2.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.76
Date2015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-20

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_95556.4NR_all_95556.32.45(11) 4V8U|1|AV, 4V68|1|AW, 4V5A|1|CV+4V5A|1|CX, 4V5A|1|AV+4V5A|1|AX, 3J9Z|1|S7, 3BBV|1|z, 4WT8|1|D3, 4WT8|1|C3, 4WT8|1|C2, 4V90|1|AV, 4V8U|1|CV(3) 5AA0|1|BD, 5AA0|1|BC, 5AA0|1|BE(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_95556.4NR_20.0_95556.52.77(14) 5AA0|1|BE, 3J9Z|1|S7, 4V5A|1|CV+4V5A|1|CX, 4V8U|1|AV, 4V90|1|AV, 4WT8|1|C3, 5AA0|1|BC, 5AA0|1|BD, 3BBV|1|z, 4V5A|1|AV+4V5A|1|AX, 4V68|1|AW, 4V8U|1|CV, 4WT8|1|C2, 4WT8|1|D3(0) (2) 5J8B|1|w, 5J8B|1|y
NR_all_95556.4NR_3.0_95556.52.77(1) 4V90|1|AV(13) 4V5A|1|AV+4V5A|1|AX, 4V8U|1|CV, 5AA0|1|BC, 3J9Z|1|S7, 4V8U|1|AV, 4WT8|1|D3, 3BBV|1|z, 4V68|1|AW, 4WT8|1|C3, 5AA0|1|BE, 4V5A|1|CV+4V5A|1|CX, 4WT8|1|C2, 5AA0|1|BD(2) 5J8B|1|w, 5J8B|1|y
NR_all_95556.4NR_3.5_95556.52.77(6) 4V90|1|AV, 4WT8|1|C2, 4WT8|1|C3, 4V5A|1|AV+4V5A|1|AX, 4V5A|1|CV+4V5A|1|CX, 4WT8|1|D3(8) 3BBV|1|z, 4V8U|1|CV, 5AA0|1|BE, 4V8U|1|AV, 5AA0|1|BD, 4V68|1|AW, 3J9Z|1|S7, 5AA0|1|BC(2) 5J8B|1|y, 5J8B|1|w
NR_all_95556.4NR_4.0_95556.52.77(9) 4WT8|1|D3, 4V5A|1|AV+4V5A|1|AX, 4V5A|1|CV+4V5A|1|CX, 4V8U|1|AV, 4V8U|1|CV, 4V90|1|AV, 4WT8|1|C2, 3J9Z|1|S7, 4WT8|1|C3(5) 3BBV|1|z, 5AA0|1|BC, 5AA0|1|BE, 4V68|1|AW, 5AA0|1|BD(2) 5J8B|1|w, 5J8B|1|y
NR_all_95556.4NR_all_95556.52.77(14) 3J9Z|1|S7, 4V5A|1|CV+4V5A|1|CX, 4V8U|1|AV, 4V90|1|AV, 4WT8|1|C3, 5AA0|1|BC, 5AA0|1|BE, 3BBV|1|z, 4V5A|1|AV+4V5A|1|AX, 4V68|1|AW, 4V8U|1|CV, 4WT8|1|C2, 4WT8|1|D3, 5AA0|1|BD(0) (2) 5J8B|1|w, 5J8B|1|y

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13J9Z|1|S7Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GELECTRON MICROSCOPY3.674
24WT8|1|C3Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-RAY DIFFRACTION3.476
34WT8|1|D3Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-RAY DIFFRACTION3.476
44V68|1|AWT. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.ELECTRON MICROSCOPY6.476
55AA0|1|BCComplex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCPELECTRON MICROSCOPY576
64WT8|1|C2Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complexX-RAY DIFFRACTION3.475
75AA0|1|BDComplex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCPELECTRON MICROSCOPY575
83BBV|1|zThe tRNA(phe) fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complexELECTRON MICROSCOPY1067
94V8U|1|CVCrystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.776
104V8U|1|AVCrystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.X-RAY DIFFRACTION3.776
114V5A|1|CV+4V5A|1|CXStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.517
125AA0|1|BEComplex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCPELECTRON MICROSCOPY575
134V5A|1|AV+4V5A|1|AXStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.517
144V90|1|AVThermus thermophilus RibosomeX-RAY DIFFRACTION2.9576