Equivalence class NR_all_98608.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5MQF|1|2+ 5MQF|1|6 (rep) | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | Human gene for small nuclear RNA U2 (snRNA U2), Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA, MINX pre-mRNA (intron) | Homo sapiens | Eukarya | RF00004 + RF00026 | Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) | Electron microscopy | 5.9 | 2017-03-22 |
| 2 | 6Y5Q|1|2 | U2 splicesomal small nuclear RNA | U2snRNA | Homo sapiens | Eukarya | RF00004 | human 17S U2 snRNP | Electron microscopy | 7.1 | 2020-06-17 |
| 3 | 6Y53|1|2 | U2 splicesomal small nuclear RNA | U2 snRNA | Homo sapiens | Eukarya | RF00004 | human 17S U2 snRNP low resolution part | Electron microscopy | 7.1 | 2020-06-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_98608.1 | NR_all_58059.1 | 3.131 | (1) 5MQF|1|2+5MQF|1|6 | (2) 6Y53|1|2, 6Y5Q|1|2 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_98608.1 | NR_all_98608.2 | 3.133 | (3) 5MQF|1|2+5MQF|1|6, 6Y5Q|1|2, 6Y53|1|2 | (0) | (1) 6Y50|1|2 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6Y5Q|1|2 | human 17S U2 snRNP | ELECTRON MICROSCOPY | 7.1 | 148 |
| 2 | 6Y53|1|2 | human 17S U2 snRNP low resolution part | ELECTRON MICROSCOPY | 7.1 | 98 |
| 3 | 5MQF|1|2+5MQF|1|6 | Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) | ELECTRON MICROSCOPY | 5.9 | 140 |