28SP Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_28SP_001 | 1/A/12:17 | GNRA Not in a motif group | geometric HL_5DDO_001 HL_42097.2 | |
| HL_28SP_002 | 2/A/12:17 | GNRA Not in a motif group | geometric HL_5DDO_001 HL_42097.2 | |
| HL_28SP_003 | 3/A/12:17 | GNRA Not in a motif group | geometric HL_5DDO_001 HL_42097.2 | |
| HL_28SP_004 | 4/A/12:17 | GNRA Not in a motif group | geometric HL_4LFB_022 HL_42097.2 | |
| HL_28SP_005 | 5/A/12:17 | GNRA Not in a motif group | geometric HL_5DDO_001 HL_42097.2 | |
| HL_28SP_006 | 6/A/12:17 | No text annotation Not in a motif group | geometric HL_3IGI_004 HL_30784.2 | |
| HL_28SP_007 | 7/A/12:17 | No text annotation Not in a motif group | geometric HL_3IGI_004 HL_30784.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_28SP_001 | 1/A/5:10, 1/A/19:24 | No text annotation Not in a motif group | ||
| IL_28SP_002 | 2/A/5:10, 2/A/19:24 | No text annotation Not in a motif group | ||
| IL_28SP_003 | 3/A/5:10, 3/A/19:24 | No text annotation Not in a motif group | ||
| IL_28SP_004 | 4/A/5:10, 4/A/19:24 | No text annotation Not in a motif group | ||
| IL_28SP_006 | 5/A/5:10, 5/A/19:24 | No text annotation Not in a motif group | ||
| IL_28SP_007 | 6/A/5:10, 6/A/19:24 | No text annotation Not in a motif group | ||
| IL_28SP_008 | 7/A/5:10, 7/A/19:24 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_28SP_005 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
Coloring options: