4D5Y Summary
- Structure Title
- 4D5Y Summary
- Authors
- Release Date
- 2015-03-04
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 9.0 Å
- Chains
-
- 3 RNA chains from Oryctolagus cuniculus
- 43 other chains
- Compounds
- 28S Ribosomal RNA, 5.8S Ribosomal RNA, 5S Ribosomal RNA, 60S RIBOSOMAL PROTEIN UL2, 60S RIBOSOMAL PROTEIN UL3, 60S RIBOSOMAL PROTEIN UL4, 60S RIBOSOMAL PROTEIN UL18, 60S RIBOSOMAL PROTEIN EL6, 60S RIBOSOMAL PROTEIN UL30, 60S RIBOSOMAL PROTEIN EL8, 60S RIBOSOMAL PROTEIN UL6, 60S RIBOSOMAL PROTEIN UL16, 60S RIBOSOMAL PROTEIN UL5, 60S RIBOSOMAL PROTEIN EL13, 60S RIBOSOMAL PROTEIN EL14, 60S RIBOSOMAL PROTEIN EL15, 60S RIBOSOMAL PROTEIN UL13, 60S RIBOSOMAL PROTEIN UL22, 60S RIBOSOMAL PROTEIN EL18, 60S RIBOSOMAL PROTEIN UL19, 60S RIBOSOMAL PROTEIN EL20, 60S RIBOSOMAL PROTEIN EL21, 60S RIBOSOMAL PROTEIN EL22, 60S RIBOSOMAL PROTEIN UL14, 60S RIBOSOMAL PROTEIN EL24, 60S RIBOSOMAL PROTEIN UL23, 60S RIBOSOMAL PROTEIN UL24, 60S RIBOSOMAL PROTEIN EL27, 60S RIBOSOMAL PROTEIN UL15, 60S RIBOSOMAL PROTEIN EL29, 60S RIBOSOMAL PROTEIN EL30, 60S RIBOSOMAL PROTEIN EL31, 60S RIBOSOMAL PROTEIN EL32, 60S RIBOSOMAL PROTEIN EL33, 60S RIBOSOMAL PROTEIN EL34, 60S RIBOSOMAL PROTEIN UL29, 60S RIBOSOMAL PROTEIN EL36, 60S RIBOSOMAL PROTEIN EL37, 60S RIBOSOMAL PROTEIN EL38, 60S RIBOSOMAL PROTEIN EL39, 60S RIBOSOMAL PROTEIN EL40, 60S RIBOSOMAL PROTEIN EL41, 60S RIBOSOMAL PROTEIN EL44, 60S RIBOSOMAL PROTEIN EL43, 60S RIBOSOMAL PROTEIN EL28, 60S RIBOSOMAL PROTEIN UL1
Pairwise Interactions
Interactions annotated by FR3D:- 1,100 base-pairs
- 3,388 base-stacking
- 1,415 base-phosphate
- 203 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 4D5Y contains:- 158 internal loops from 0 motif groups
- 77 hairpin loops from 0 motif groups
- 16 three-way junctions
3D Redundancy
4D5Y has chains which belong to the following equivalence classes in the current representative set:- NR_20.0_06650.33 (1)
- NR_20.0_10255.33 (1)
- NR_all_06650.33 (1)
- NR_all_10255.33 (1)
Similar structures
7O7Y 6R7Q 6FRK 7TUT 5LZU 6HCJ 6R6G 7NWG 6MTB 5LZT 6GZ4 5LZX 6GZ3 5LZW 5LZZ 6GZ5 6MTC 6MTE 6HCF 5LZY 4UJC 4D67 4UJD 3JAJ 3JAN 6FTG 4UJE 6HCM 6HCQ 6FTJ 3J92 3JAI 3JAG 6FTI 7NWH 3JAH 6D90 7QWS 8BTK 7NWI 7O81 7TOQ 7QWR 7TOR 7UCK 7QWQ 6SGC 8B5L 7OBR 8P2K 7O80 8BPO 8B6C 7ZJW 7OYD 7ZJX 8BHF 6R5Q 6MTD 5LZV 7A01 5LZS 6T59 7TM3 6D9J 7NFX 7UCJ 6P5N 7MDZ 6ZVK 6P5K 6P5J 6R6P 6P5I 7O7ZStructures from NR_all_06650.33