4D5Y Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4D5Y_001 | No text annotation | ||
| HL_4D5Y_002 | No text annotation | ||
| HL_4D5Y_003 | No text annotation | ||
| HL_4D5Y_004 | No text annotation | ||
| HL_4D5Y_005 | No text annotation | ||
| HL_4D5Y_078 | T-loop with 1 bulged base | ||
| HL_4D5Y_006 | No text annotation | ||
| HL_4D5Y_007 | T-loop with unstacked turn | ||
| HL_4D5Y_008 | No text annotation | ||
| HL_4D5Y_079 | T-loop related | ||
| HL_4D5Y_009 | Pseudoknot geometry | ||
| HL_4D5Y_010 | GNRA | ||
| HL_4D5Y_011 | No text annotation | ||
| HL_4D5Y_012 | No text annotation | ||
| HL_4D5Y_080 | No text annotation | ||
| HL_4D5Y_013 | No text annotation | ||
| HL_4D5Y_014 | T-loop with 2 stacked bulged bases | ||
| HL_4D5Y_015 | No text annotation | ||
| HL_4D5Y_081 | No text annotation | ||
| HL_4D5Y_016 | GNRA | ||
| HL_4D5Y_017 | No text annotation | ||
| HL_4D5Y_018 | No text annotation | ||
| HL_4D5Y_019 | No text annotation | ||
| HL_4D5Y_085 | No text annotation | ||
| HL_4D5Y_020 | No text annotation | ||
| HL_4D5Y_021 | No text annotation | ||
| HL_4D5Y_022 | No text annotation | ||
| HL_4D5Y_023 | Externally structured | ||
| HL_4D5Y_024 | No text annotation | ||
| HL_4D5Y_025 | No text annotation | ||
| HL_4D5Y_026 | GNRA | ||
| HL_4D5Y_027 | No text annotation | ||
| HL_4D5Y_028 | No text annotation | ||
| HL_4D5Y_029 | No text annotation | ||
| HL_4D5Y_030 | GNRA | ||
| HL_4D5Y_031 | T-loop with 2 stacked bulged bases | ||
| HL_4D5Y_032 | No text annotation | ||
| HL_4D5Y_086 | Pseudoknot geometry with 3' bulge | ||
| HL_4D5Y_033 | GNRA variation | ||
| HL_4D5Y_034 | No text annotation | ||
| HL_4D5Y_087 | Mini UNCG | ||
| HL_4D5Y_035 | No text annotation | ||
| HL_4D5Y_036 | No text annotation | ||
| HL_4D5Y_037 | GNRA | ||
| HL_4D5Y_038 | No text annotation | ||
| HL_4D5Y_039 | No text annotation | ||
| HL_4D5Y_040 | No text annotation | ||
| HL_4D5Y_041 | No text annotation | ||
| HL_4D5Y_042 | No text annotation | ||
| HL_4D5Y_043 | GNRA | ||
| HL_4D5Y_044 | UNCG | ||
| HL_4D5Y_045 | No text annotation | ||
| HL_4D5Y_046 | No text annotation | ||
| HL_4D5Y_047 | No text annotation | ||
| HL_4D5Y_048 | GNRA | ||
| HL_4D5Y_049 | GNRA | ||
| HL_4D5Y_050 | No text annotation | ||
| HL_4D5Y_051 | No text annotation | ||
| HL_4D5Y_052 | No text annotation | ||
| HL_4D5Y_053 | No text annotation | ||
| HL_4D5Y_088 | No text annotation | ||
| HL_4D5Y_054 | No text annotation | ||
| HL_4D5Y_055 | No text annotation | ||
| HL_4D5Y_056 | No text annotation | ||
| HL_4D5Y_057 | No text annotation | ||
| HL_4D5Y_058 | Pseudoknot geometry | ||
| HL_4D5Y_059 | No text annotation | ||
| HL_4D5Y_060 | GNRA with extra cWW | ||
| HL_4D5Y_082 | GNRA | ||
| HL_4D5Y_061 | No text annotation | ||
| HL_4D5Y_062 | No text annotation | ||
| HL_4D5Y_063 | No text annotation | ||
| HL_4D5Y_089 | GNRA variation | ||
| HL_4D5Y_064 | No text annotation | ||
| HL_4D5Y_065 | GNRA | ||
| HL_4D5Y_066 | GNRA | ||
| HL_4D5Y_067 | Ribsomal LSU H95 | ||
| HL_4D5Y_068 | No text annotation | ||
| HL_4D5Y_083 | No text annotation | ||
| HL_4D5Y_069 | No text annotation | ||
| HL_4D5Y_070 | No text annotation | ||
| HL_4D5Y_071 | No text annotation | ||
| HL_4D5Y_090 | No text annotation | ||
| HL_4D5Y_072 | Pseudoknot with intercalation | ||
| HL_4D5Y_073 | No text annotation | ||
| HL_4D5Y_084 | No text annotation | ||
| HL_4D5Y_074 | No text annotation | ||
| HL_4D5Y_075 | No text annotation | ||
| HL_4D5Y_076 | No text annotation | ||
| HL_4D5Y_077 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4D5Y_001 | No text annotation | ||
| IL_4D5Y_159 | No text annotation | ||
| IL_4D5Y_208 | No text annotation | ||
| IL_4D5Y_002 | Other IL | ||
| IL_4D5Y_003 | Tandem non-canonical cWW pairs | ||
| IL_4D5Y_004 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_4D5Y_160 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4D5Y_005 | No text annotation | ||
| IL_4D5Y_161 | No text annotation | ||
| IL_4D5Y_209 | No text annotation | ||
| IL_4D5Y_006 | Minor groove platform | ||
| IL_4D5Y_007 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_210 | No text annotation | ||
| IL_4D5Y_162 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_008 | Single bulged A | ||
| IL_4D5Y_009 | No text annotation | ||
| IL_4D5Y_163 | No text annotation | ||
| IL_4D5Y_010 | Single stack bend | ||
| IL_4D5Y_011 | Triple sheared with non-canonical cWW | ||
| IL_4D5Y_012 | No text annotation | ||
| IL_4D5Y_013 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_014 | No text annotation | ||
| IL_4D5Y_211 | No text annotation | ||
| IL_4D5Y_164 | No text annotation | ||
| IL_4D5Y_165 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_212 | No text annotation | ||
| IL_4D5Y_015 | No text annotation | ||
| IL_4D5Y_016 | No text annotation | ||
| IL_4D5Y_213 | No text annotation | ||
| IL_4D5Y_017 | No text annotation | ||
| IL_4D5Y_018 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_019 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_020 | No text annotation | ||
| IL_4D5Y_166 | No text annotation | ||
| IL_4D5Y_214 | No text annotation | ||
| IL_4D5Y_167 | No text annotation | ||
| IL_4D5Y_021 | No text annotation | ||
| IL_4D5Y_022 | Tandem non-canonical cWW pairs | ||
| IL_4D5Y_023 | No text annotation | ||
| IL_4D5Y_024 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_168 | No text annotation | ||
| IL_4D5Y_025 | No text annotation | ||
| IL_4D5Y_026 | Tandem non-canonical cWW pairs | ||
| IL_4D5Y_169 | Multiple bulged bases | ||
| IL_4D5Y_027 | Multiple bulged bases | ||
| IL_4D5Y_028 | No text annotation | ||
| IL_4D5Y_029 | No text annotation | ||
| IL_4D5Y_170 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_030 | Multiple bulged bases | ||
| IL_4D5Y_031 | No text annotation | ||
| IL_4D5Y_171 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_032 | No text annotation | ||
| IL_4D5Y_172 | No text annotation | ||
| IL_4D5Y_033 | Tandem non-canonical cWW pairs | ||
| IL_4D5Y_034 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_035 | No text annotation | ||
| IL_4D5Y_036 | No text annotation | ||
| IL_4D5Y_215 | No text annotation | ||
| IL_4D5Y_173 | Tandem non-canonical cWW pairs | ||
| IL_4D5Y_037 | No text annotation | ||
| IL_4D5Y_038 | Tandem non-canonical cWW pairs | ||
| IL_4D5Y_039 | Single bulged A | ||
| IL_4D5Y_174 | No text annotation | ||
| IL_4D5Y_040 | Minor groove platform | ||
| IL_4D5Y_041 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_175 | No text annotation | ||
| IL_4D5Y_042 | tHW-tHW cross-strand stack | ||
| IL_4D5Y_176 | Triple sheared with non-canonical cWW | ||
| IL_4D5Y_043 | No text annotation | ||
| IL_4D5Y_044 | Major groove platform with extra cWW | ||
| IL_4D5Y_045 | Single bulged U | ||
| IL_4D5Y_046 | Multiple bulged bases | ||
| IL_4D5Y_047 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_048 | No text annotation | ||
| IL_4D5Y_049 | Multiple bulged bases | ||
| IL_4D5Y_050 | Single bulged G | ||
| IL_4D5Y_051 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4D5Y_177 | No text annotation | ||
| IL_4D5Y_052 | Minor groove platform | ||
| IL_4D5Y_216 | C-loop with bulged stacked A's | ||
| IL_4D5Y_053 | No text annotation | ||
| IL_4D5Y_054 | Tandem non-canonical cWW pairs | ||
| IL_4D5Y_178 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_055 | Tandem non-canonical cWW pairs | ||
| IL_4D5Y_056 | No text annotation | ||
| IL_4D5Y_179 | No text annotation | ||
| IL_4D5Y_057 | No text annotation | ||
| IL_4D5Y_058 | Single bulged A | ||
| IL_4D5Y_059 | Tandem non-canonical cWW pairs | ||
| IL_4D5Y_180 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_060 | UAA/GAN | ||
| IL_4D5Y_061 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_062 | Multiple bulged bases | ||
| IL_4D5Y_181 | Partly complementary | ||
| IL_4D5Y_063 | No text annotation | ||
| IL_4D5Y_064 | No text annotation | ||
| IL_4D5Y_065 | Single bulged U | ||
| IL_4D5Y_066 | Tandem non-canonical cWW pairs | ||
| IL_4D5Y_067 | Isolated cWS basepair | ||
| IL_4D5Y_068 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_182 | Single bulged A | ||
| IL_4D5Y_069 | No text annotation | ||
| IL_4D5Y_217 | No text annotation | ||
| IL_4D5Y_183 | No text annotation | ||
| IL_4D5Y_070 | Single bulged A | ||
| IL_4D5Y_071 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_4D5Y_072 | Major groove platform; stack outside cWW | ||
| IL_4D5Y_184 | No text annotation | ||
| IL_4D5Y_073 | C-loop | ||
| IL_4D5Y_074 | UAA/GAN | ||
| IL_4D5Y_075 | No text annotation | ||
| IL_4D5Y_185 | Partly complementary | ||
| IL_4D5Y_076 | Isolated cWH basepair | ||
| IL_4D5Y_077 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_078 | Triple sheared | ||
| IL_4D5Y_079 | Single bulged A | ||
| IL_4D5Y_080 | Single stack bend | ||
| IL_4D5Y_081 | No text annotation | ||
| IL_4D5Y_186 | No text annotation | ||
| IL_4D5Y_082 | Minor groove platform | ||
| IL_4D5Y_187 | No text annotation | ||
| IL_4D5Y_218 | No text annotation | ||
| IL_4D5Y_083 | No text annotation | ||
| IL_4D5Y_084 | No text annotation | ||
| IL_4D5Y_085 | Isolated tWW turn | ||
| IL_4D5Y_086 | Major groove platform; stack outside cWW | ||
| IL_4D5Y_188 | No text annotation | ||
| IL_4D5Y_087 | Intercalated tWH | ||
| IL_4D5Y_088 | No text annotation | ||
| IL_4D5Y_089 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_090 | No text annotation | ||
| IL_4D5Y_091 | Single bulged A | ||
| IL_4D5Y_092 | Kink-turn related | ||
| IL_4D5Y_093 | Major groove intercalation | ||
| IL_4D5Y_094 | Multiple bulged bases | ||
| IL_4D5Y_095 | No text annotation | ||
| IL_4D5Y_096 | No text annotation | ||
| IL_4D5Y_097 | No text annotation | ||
| IL_4D5Y_098 | Single stack bend | ||
| IL_4D5Y_099 | No text annotation | ||
| IL_4D5Y_100 | No text annotation | ||
| IL_4D5Y_101 | No text annotation | ||
| IL_4D5Y_102 | Major groove platform with intercalation | ||
| IL_4D5Y_189 | Single bulged U | ||
| IL_4D5Y_103 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_104 | Minor groove platform | ||
| IL_4D5Y_105 | No text annotation | ||
| IL_4D5Y_190 | No text annotation | ||
| IL_4D5Y_106 | No text annotation | ||
| IL_4D5Y_219 | No text annotation | ||
| IL_4D5Y_191 | No text annotation | ||
| IL_4D5Y_107 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_108 | No text annotation | ||
| IL_4D5Y_192 | No text annotation | ||
| IL_4D5Y_193 | No text annotation | ||
| IL_4D5Y_109 | No text annotation | ||
| IL_4D5Y_110 | No text annotation | ||
| IL_4D5Y_111 | Single bulged A | ||
| IL_4D5Y_112 | Isolated tHS basepair with bulges | ||
| IL_4D5Y_113 | Tandem non-canonical cWW pairs | ||
| IL_4D5Y_114 | Single stack bend | ||
| IL_4D5Y_115 | Major groove platform | ||
| IL_4D5Y_116 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_117 | Major groove platform | ||
| IL_4D5Y_118 | Major groove minor groove platform with extra cWW | ||
| IL_4D5Y_119 | No text annotation | ||
| IL_4D5Y_120 | Major groove platform | ||
| IL_4D5Y_121 | Isolated non-canonical cWW with bulges | ||
| IL_4D5Y_194 | No text annotation | ||
| IL_4D5Y_122 | No text annotation | ||
| IL_4D5Y_123 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_124 | No text annotation | ||
| IL_4D5Y_125 | Isolated cWH basepair | ||
| IL_4D5Y_195 | Single bulged A | ||
| IL_4D5Y_126 | No text annotation | ||
| IL_4D5Y_196 | No text annotation | ||
| IL_4D5Y_127 | No text annotation | ||
| IL_4D5Y_128 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4D5Y_129 | No text annotation | ||
| IL_4D5Y_220 | No text annotation | ||
| IL_4D5Y_197 | No text annotation | ||
| IL_4D5Y_130 | UAA/GAN related | ||
| IL_4D5Y_131 | Tandem non-canonical cWW pairs | ||
| IL_4D5Y_198 | No text annotation | ||
| IL_4D5Y_132 | Isolated cWS basepair | ||
| IL_4D5Y_133 | UAA/GAN with extra cWW | ||
| IL_4D5Y_199 | UAA/GAN | ||
| IL_4D5Y_134 | No text annotation | ||
| IL_4D5Y_200 | Minor groove platform | ||
| IL_4D5Y_135 | Tandem non-canonical cWW pairs | ||
| IL_4D5Y_201 | No text annotation | ||
| IL_4D5Y_202 | Tandem non-canonical cWW pairs | ||
| IL_4D5Y_136 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_221 | No text annotation | ||
| IL_4D5Y_137 | No text annotation | ||
| IL_4D5Y_138 | No text annotation | ||
| IL_4D5Y_139 | Isolated non-canonical cWW pair | ||
| IL_4D5Y_203 | Multiple bulged bases | ||
| IL_4D5Y_204 | No text annotation | ||
| IL_4D5Y_140 | No text annotation | ||
| IL_4D5Y_141 | No text annotation | ||
| IL_4D5Y_142 | Minor groove platform | ||
| IL_4D5Y_143 | Single bulged G | ||
| IL_4D5Y_144 | Tandem non-canonical cWW pairs | ||
| IL_4D5Y_145 | No text annotation | ||
| IL_4D5Y_146 | Single bulged U | ||
| IL_4D5Y_205 | No text annotation | ||
| IL_4D5Y_147 | No text annotation | ||
| IL_4D5Y_148 | No text annotation | ||
| IL_4D5Y_149 | Single bulged C | ||
| IL_4D5Y_150 | Double sheared; A in syn | ||
| IL_4D5Y_206 | Isolated non-canonical cWW with bulges | ||
| IL_4D5Y_151 | No text annotation | ||
| IL_4D5Y_152 | Single bulged U | ||
| IL_4D5Y_153 | Single stack bend with SAM intercalation | ||
| IL_4D5Y_154 | Multiple bulged bases | ||
| IL_4D5Y_155 | Minor groove platform related | ||
| IL_4D5Y_207 | No text annotation | ||
| IL_4D5Y_156 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4D5Y_157 | Isolated cWH basepair | ||
| IL_4D5Y_158 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4D5Y_017 | No text annotation | ||
| J3_4D5Y_001 | No text annotation | ||
| J3_4D5Y_035 | No text annotation | ||
| J3_4D5Y_018 | No text annotation | ||
| J3_4D5Y_036 | No text annotation | ||
| J3_4D5Y_019 | No text annotation | ||
| J3_4D5Y_037 | No text annotation | ||
| J3_4D5Y_020 | No text annotation | ||
| J3_4D5Y_021 | No text annotation | ||
| J3_4D5Y_038 | No text annotation | ||
| J3_4D5Y_022 | No text annotation | ||
| J3_4D5Y_002 | No text annotation | ||
| J3_4D5Y_003 | No text annotation | ||
| J3_4D5Y_023 | No text annotation | ||
| J3_4D5Y_039 | No text annotation | ||
| J3_4D5Y_004 | No text annotation | ||
| J3_4D5Y_040 | No text annotation | ||
| J3_4D5Y_024 | No text annotation | ||
| J3_4D5Y_005 | No text annotation | ||
| J3_4D5Y_006 | No text annotation | ||
| J3_4D5Y_041 | No text annotation | ||
| J3_4D5Y_025 | No text annotation | ||
| J3_4D5Y_007 | No text annotation | ||
| J3_4D5Y_008 | No text annotation | ||
| J3_4D5Y_026 | No text annotation | ||
| J3_4D5Y_042 | No text annotation | ||
| J3_4D5Y_027 | No text annotation | ||
| J3_4D5Y_043 | No text annotation | ||
| J3_4D5Y_028 | No text annotation | ||
| J3_4D5Y_009 | No text annotation | ||
| J3_4D5Y_010 | No text annotation | ||
| J3_4D5Y_029 | No text annotation | ||
| J3_4D5Y_044 | No text annotation | ||
| J3_4D5Y_011 | No text annotation | ||
| J3_4D5Y_030 | No text annotation | ||
| J3_4D5Y_031 | No text annotation | ||
| J3_4D5Y_012 | No text annotation | ||
| J3_4D5Y_032 | No text annotation | ||
| J3_4D5Y_013 | No text annotation | ||
| J3_4D5Y_033 | No text annotation | ||
| J3_4D5Y_014 | No text annotation | ||
| J3_4D5Y_034 | No text annotation | ||
| J3_4D5Y_015 | No text annotation | ||
| J3_4D5Y_016 | No text annotation | ||
| J4_4D5Y_001 | No text annotation | ||
| J4_4D5Y_010 | No text annotation | ||
| J4_4D5Y_002 | No text annotation | ||
| J4_4D5Y_003 | No text annotation | ||
| J4_4D5Y_004 | No text annotation | ||
| J4_4D5Y_011 | No text annotation | ||
| J4_4D5Y_005 | No text annotation | ||
| J4_4D5Y_006 | No text annotation | ||
| J4_4D5Y_007 | No text annotation | ||
| J4_4D5Y_008 | No text annotation | ||
| J4_4D5Y_009 | No text annotation | ||
| J5_4D5Y_001 | No text annotation | ||
| J5_4D5Y_002 | No text annotation | ||
| J5_4D5Y_003 | No text annotation | ||
| J5_4D5Y_005 | No text annotation | ||
| J5_4D5Y_004 | No text annotation | ||
| J6_4D5Y_003 | No text annotation | ||
| J6_4D5Y_001 | No text annotation | ||
| J6_4D5Y_004 | No text annotation | ||
| J6_4D5Y_002 | No text annotation | ||
| J7_4D5Y_001 | No text annotation | ||
| J9_4D5Y_002 | No text annotation | ||
| J9_4D5Y_001 | No text annotation |
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