5WYK Summary
- Structure Title
- 5WYK Summary
- Authors
- Release Date
- 2017-03-29
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
- Chains
-
- 3 RNA chains from Saccharomyces cerevisiae
- 55 other chains
- Compounds
- U3 RNA, rRNA 2'-O-methyltransferase fibrillarin, rRNA 2'-O-methyltransferase fibrillarin, Nucleolar protein 56, Nucleolar protein 58, Ribosomal RNA-processing protein 9, 13 kDa ribonucleoprotein-associated protein, 13 kDa ribonucleoprotein-associated protein, 5ETS RNA, Utp4, Utp5, Utp8, Utp9, U3 small nucleolar RNA-associated protein 10, Utp15, Utp17, Ribosome biogenesis protein BMS1, Periodic tryptophan protein 2, U3 small nucleolar RNA-associated protein 12, U3 small nucleolar RNA-associated protein 13, U3 small nucleolar RNA-associated protein 18, U3 small nucleolar RNA-associated protein 21, Ribosomal RNA-processing protein 7, U3 small nucleolar RNA-associated protein 22, Ribosomal RNA small subunit methyltransferase NEP1, Ribosomal RNA small subunit methyltransferase NEP1, Enp2, KRR1 small subunit processome component, U3 small nucleolar ribonucleoprotein protein IMP3, U3 small nucleolar ribonucleoprotein protein IMP4, Mpp10,U3 small nucleolar RNA-associated protein MPP10, Pre-rRNA-processing protein PNO1, RNA 3'-terminal phosphate cyclase-like protein, Sof1, 18S ribosomal RNA, 40S ribosomal protein S1-A, 40S ribosomal protein S4-A, 40S ribosomal protein S5, 40S ribosomal protein S7-A, 40S ribosomal protein S8-A, 40S ribosomal protein S9-A, 40S ribosomal protein S11-A, 40S ribosomal protein S13, 40S ribosomal protein S14-A, 40S ribosomal protein S16-A, 40S ribosomal protein S22-A, 40S ribosomal protein S23-A, 40S ribosomal protein S24-A, 40S ribosomal protein S27-A, 40S ribosomal protein S28-A, 40S ribosomal protein S30-A, Utp7, Utp11, rRNA-processing protein FCF1, Ribosome biogenesis protein UTP30, Helical domain protein, Helical domain protein, Unassigned helices
Pairwise Interactions
Interactions annotated by FR3D:- 488 base-pairs
- 1,452 base-stacking
- 620 base-phosphate
- 38 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 5WYK contains:- 76 internal loops from 0 motif groups
- 31 hairpin loops from 0 motif groups
- 4 three-way junctions
3D Redundancy
5WYK has chains which belong to the following equivalence classes in the current representative set:- NR_20.0_03510.52 (1)
- NR_all_03510.52 (1)
Similar structures
4V88 5JUO 6T83 6EML 6T83 6KE6 5MC6 8BQD 7NRC 8C83 6RBE 5JUT 5JUU 6ZQG 7NRD 7ZUW 6GQV 6XIQ 5JUS 7WTR 6GQB 6Y7C 8BQX 4U56 6TNU 4U55 7ZPQ 8C00 4U51 4U4Y 6S47 4U3N 4U51 6Z6K 6Z6J 6LQP 4U56 6SV4 4U53 6RBD 4U53 5JUP 4U50 6FAI 4U50 7D63 3J6X 3J6Y 6LQV 6LQT 7AJT 6ZCE 6I7O 7D5S 3J77 3J78 4V6I 5WYJ 6LQR 6ZQE 5TZS 7D5T 4V8Z 6ZQF 6ZU9 6I7O 5WLC 7WTQ 7WTM 4V8Y 7WTP 6LQU 7WTO 4U4O 7WTL 7WTN 7D4I 6ZQD 7ZRS 6ZQC 6ZQB 7SUK 6LQQ 5LL6 6LQS 7AJU 6GQ1 4U4O 6T4Q 5DGF 5DGV 5DGE 5TGA 5DAT 4V7R 4V7R 5TGM 5TGM 5DC3 5DAT 7Q08 7ZUX 7PZY 7ZW0 5DC3 5DGF 5DGE 5DGV 5TGA 5NDG 5NDG 5LYB 5NDW 5MEI 5I4L 5OBM 6HHQ 7OSA 5TBW 4V88 5I4L 5OBM 5ON6 5NDV 5NDV 5LYB 6HHQ 5NDW 5ON6 5MEI 7OSM 5TBW 6T7I 6XIR 4U4Z 4U6F 6Q8Y 4U4N 4U4Q 4U6F 4U4U 4U52 7B7D 8CAS 4U4N 5M1J 4U55 6T7T 4U4Z 4U3N 4U4Y 6SV4 6SV4 7RR5 4U3M 4U3U 4U4R 6SNT 6TB3 4U4R 6WOO 7Q0P 7Q0R 7Q0F 7A1G 6ZVI 4U52 4U4U 4U4Q 4U3M 8C01 7MPI 7N8B 4U3U 8CAH 7MPJStructures from NR_all_03510.52