5WYK Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_5WYK_004 | 1/5A/120:125 | No text annotation | ||
HL_5WYK_005 | 1/5A/196:201 | GNRA | geometric HL_5TBW_017 NA | |
HL_5WYK_007 | 1/5A/360:365 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
HL_5WYK_032 | 1/5A/513:523 | No text annotation | ||
HL_5WYK_009 | 1/5A/515:522 | No text annotation | geometric HL_4PQV_003 HL_97917.2 | |
HL_5WYK_011 | 1/SA/154:160 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
HL_5WYK_012 | 1/SA/190:195 | No text annotation | homologous HL_8P9A_193 HL_53890.2 | |
HL_5WYK_014 | 1/SA/276:279 | Mini UNCG | geometric HL_5TBW_071 NA | |
HL_5WYK_015 | 1/SA/330:338 | GNRA related | homologous HL_4V88_193 NA | |
HL_5WYK_016 | 1/SA/368:373 | No text annotation | ||
HL_5WYK_017 | 1/SA/393:404 | No text annotation | homologous HL_4V88_195 NA | |
HL_5WYK_018 | 1/SA/414:419 | UNCG | homologous HL_4V88_196 NA | |
HL_5WYK_019 | 1/SA/450:456 | No text annotation | homologous HL_4V88_197 NA | |
HL_5WYK_020 | 1/SA/491:496 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
HL_5WYK_021 | 1/SA/520:532 | No text annotation | homologous HL_4V88_199 NA | |
HL_5WYK_022 | 1/SA/569:574 | Externally structured | geometric HL_8C3A_022 NA | |
HL_5WYK_024 | 1/SA/900:909 | No text annotation | homologous HL_4V88_206 NA | |
HL_5WYK_025 | 1/SA/937:942 | GNRA | homologous HL_4V88_207 NA | |
HL_5WYK_026 | 1/SA/1055:1064 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
HL_5WYK_028 | 1/SA/1501:1506 | GNRA | homologous HL_4V88_218 NA | |
HL_5WYK_029 | 1/SA/1594:1602 | No text annotation | ||
HL_5WYK_031 | 1/SA/1802:1807 | GNRA variation | geometric HL_5J7L_180 HL_37824.7 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_5WYK_001 | No text annotation | ||
HL_5WYK_002 | No text annotation | ||
HL_5WYK_003 | No text annotation | ||
HL_5WYK_006 | No text annotation | ||
HL_5WYK_008 | No text annotation | ||
HL_5WYK_010 | No text annotation | ||
HL_5WYK_013 | No text annotation | ||
HL_5WYK_023 | No text annotation | ||
HL_5WYK_027 | No text annotation | ||
HL_5WYK_030 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_5WYK_001 | 1/3A/1:4, 1/SA/1120:1123 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_85033.2 | |
IL_5WYK_077 | 1/3A/2:6, 1/SA/1118:1122 | No text annotation | ||
IL_5WYK_002 | 1/3A/4:6, 1/SA/1118:1120 | Isolated non-canonical cWW pair | geometric IL_1YZ9_002 IL_87907.2 | |
IL_5WYK_003 | 1/3A/48:50, 1/5A/468:470 | Self complementary | geometric IL_5E81_371 NA | |
IL_5WYK_004 | 1/3A/50:52, 1/5A/466:468 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_87907.2 | |
IL_5WYK_005 | 1/3A/78:85, 1/3A/325:329 | No text annotation | ||
IL_5WYK_006 | 1/3A/97:98, 1/3A/317:319 | No text annotation | ||
IL_5WYK_007 | 1/5A/11:15, 1/5A/66:71 | No text annotation | ||
IL_5WYK_008 | 1/5A/16:18, 1/5A/62:65 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
IL_5WYK_009 | 1/5A/94:95, 1/5A/149:156 | Multiple bulged bases | geometric IL_1R3E_001 IL_84476.1 | |
IL_5WYK_010 | 1/5A/97:99, 1/5A/145:147 | Isolated cWH basepair | geometric IL_4J50_003 IL_10167.6 | |
IL_5WYK_011 | 1/5A/100:104, 1/5A/140:144 | No text annotation | ||
IL_5WYK_089 | 1/5A/107:110, 1/5A/136:137 | Multiple bulged bases | geometric IL_1R3E_001 IL_84476.1 | |
IL_5WYK_013 | 1/5A/115:120, 1/5A/125:131 | No text annotation | ||
IL_5WYK_014 | 1/5A/167:172, 1/5A/224:228 | No text annotation | ||
IL_5WYK_080 | 1/5A/174:178, 1/5A/219:222 | No text annotation | ||
IL_5WYK_015 | 1/5A/175:178, 1/5A/219:221 | No text annotation | ||
IL_5WYK_017 | 1/5A/187:189, 1/5A/208:210 | Isolated cWH basepair | geometric IL_4KQ0_003 IL_10167.6 | |
IL_5WYK_018 | 1/5A/246:247, 1/5A/265:267 | Single bulged U | geometric IL_4LFB_046 IL_89505.4 | |
IL_5WYK_019 | 1/5A/336:341, 1/5A/384:387 | No text annotation | ||
IL_5WYK_020 | 1/5A/342:343, 1/5A/381:383 | Single bulged U | geometric IL_3WBM_001 IL_89505.4 | |
IL_5WYK_021 | 1/5A/346:349, 1/5A/375:378 | Tandem non-canonical cWW pairs | geometric IL_5TBW_128 NA | |
IL_5WYK_022 | 1/5A/352:356, 1/5A/369:372 | No text annotation | ||
IL_5WYK_090 | 1/5A/352:357, 1/5A/368:372 | No text annotation | ||
IL_5WYK_023 | 1/5A/395:397, 1/5A/460:462 | Isolated non-canonical cWW pair | geometric IL_3IVK_002 IL_87907.2 | |
IL_5WYK_091 | 1/5A/402:406, 1/5A/450:455 | No text annotation | ||
IL_5WYK_025 | 1/5A/413:414, 1/5A/440:443 | Minor groove platform | geometric IL_4LFB_054 IL_51454.3 | |
IL_5WYK_026 | 1/5A/501:503, 1/5A/533:537 | No text annotation | ||
IL_5WYK_027 | 1/5A/505:507, 1/5A/529:531 | Isolated non-canonical cWW contact | geometric IL_5UNE_001 IL_44465.1 | |
IL_5WYK_028 | 1/5A/513:515, 1/5A/522:523 | Single stack bend | geometric IL_7KGA_006 IL_26793.1 | |
IL_5WYK_029 | 1/5A/550:552, 1/5A/585:587 | Isolated non-canonical cWW pair | geometric IL_4V88_419 NA | |
IL_5WYK_030 | 1/5A/555:558, 1/5A/579:582 | Tandem non-canonical cWW pairs | geometric IL_4V88_432 NA | |
IL_5WYK_031 | 1/5A/559:561, 1/5A/576:578 | Isolated non-canonical cWW pair | geometric IL_4E48_006 IL_87907.2 | |
IL_5WYK_032 | 1/SA/24:26, 1/SA/600:601 | No text annotation | ||
IL_5WYK_033 | 1/SA/50:52, 1/SA/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
IL_5WYK_034 | 1/SA/109:112, 1/SA/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
IL_5WYK_035 | 1/SA/113:116, 1/SA/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
IL_5WYK_036 | 1/SA/117:122, 1/SA/295:299 | No text annotation | homologous IL_4V88_393 NA | |
IL_5WYK_037 | 1/SA/144:149, 1/SA/165:171 | tWH-tWH-tHW-tHW | geometric IL_4LFB_009 IL_12745.1 | |
IL_5WYK_038 | 1/SA/150:152, 1/SA/162:164 | Isolated non-canonical cWW pair | geometric IL_1RPU_001 IL_87907.2 | |
IL_5WYK_039 | 1/SA/186:189, 1/SA/196:199 | Double sheared | homologous IL_4V88_396 NA | |
IL_5WYK_040 | 1/SA/204:206, 1/SA/259:263 | Major groove platform with extra cWW | geometric IL_1MMS_002 IL_51387.2 | |
IL_5WYK_041 | 1/SA/206:208, 1/SA/257:259 | No text annotation | ||
IL_5WYK_092 | 1/SA/206:209, 1/SA/256:259 | Tandem non-canonical cWW pairs | geometric IL_4EYA_008 IL_51479.1 | |
IL_5WYK_042 | 1/SA/265:267, 1/SA/288:289 | Single bulged A | homologous IL_8P9A_388 IL_31462.6 | |
IL_5WYK_043 | 1/SA/270:273, 1/SA/283:285 | No text annotation | ||
IL_5WYK_044 | 1/SA/275:276, 1/SA/279:281 | No text annotation | ||
IL_5WYK_045 | 1/SA/311:316, 1/SA/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
IL_5WYK_046 | 1/SA/318:323, 1/SA/345:346 | No text annotation | homologous IL_8P9A_392 IL_47074.2 | |
IL_5WYK_047 | 1/SA/363:365, 1/SA/376:381 | No text annotation | ||
IL_5WYK_048 | 1/SA/389:391, 1/SA/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
IL_5WYK_049 | 1/SA/443:447, 1/SA/460:461 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
IL_5WYK_050 | 1/SA/447:448, 1/SA/458:460 | Single bulged G | geometric IL_3NDB_004 IL_00225.13 | |
IL_5WYK_051 | 1/SA/480:485, 1/SA/502:508 | No text annotation | ||
IL_5WYK_085 | 1/SA/480:488, 1/SA/499:508 | No text annotation | ||
IL_5WYK_052 | 1/SA/517:520, 1/SA/532:535 | Double sheared | geometric IL_1SA9_002 IL_09705.15 | |
IL_5WYK_053 | 1/SA/557:559, 1/SA/586:587 | No text annotation | ||
IL_5WYK_054 | 1/SA/627:631, 1/SA/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
IL_5WYK_055 | 1/SA/865:866, 1/SA/962:965 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_50694.7 | |
IL_5WYK_093 | 1/SA/868:869, 1/SA/958:960 | Single bulged U | geometric IL_2A64_002 IL_89505.4 | |
IL_5WYK_057 | 1/SA/871:873, 1/SA/954:956 | Isolated non-canonical cWW pair | geometric IL_2R8S_001 IL_87907.2 | |
IL_5WYK_058 | 1/SA/874:878, 1/SA/950:953 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
IL_5WYK_059 | 1/SA/885:888, 1/SA/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
IL_5WYK_060 | 1/SA/893:899, 1/SA/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
IL_5WYK_061 | 1/SA/1041:1044, 1/SA/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
IL_5WYK_062 | 1/SA/1051:1053, 1/SA/1066:1067 | No text annotation | ||
IL_5WYK_063 | 1/SA/1149:1151, 1/SA/1627:1628 | Single bulged G | homologous IL_4V88_442 NA | |
IL_5WYK_064 | 1/SA/1157:1161, 1/SA/1616:1621 | No text annotation | ||
IL_5WYK_065 | 1/SA/1173:1175, 1/SA/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
IL_5WYK_067 | 1/SA/1495:1498, 1/SA/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
IL_5WYK_068 | 1/SA/1642:1644, 1/SA/1757:1759 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_87907.2 | |
IL_5WYK_094 | 1/SA/1644:1647, 1/SA/1753:1757 | No text annotation | ||
IL_5WYK_070 | 1/SA/1650:1652, 1/SA/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
IL_5WYK_071 | 1/SA/1653:1656, 1/SA/1744:1747 | Double sheared | geometric IL_5AOX_003 IL_09705.15 | |
IL_5WYK_072 | 1/SA/1656:1658, 1/SA/1743:1744 | No text annotation | ||
IL_5WYK_073 | 1/SA/1665:1667, 1/SA/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
IL_5WYK_074 | 1/SA/1669:1672, 1/SA/1729:1732 | Double sheared | homologous IL_4V88_471 NA | |
IL_5WYK_075 | 1/SA/1672:1674, 1/SA/1727:1729 | Isolated non-canonical cWW pair | geometric IL_5TBW_378 NA | |
IL_5WYK_076 | 1/SA/1675:1678, 1/SA/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_4V88_473 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_5WYK_078 | No text annotation | ||
IL_5WYK_012 | Isolated non-canonical cWW pair | ||
IL_5WYK_079 | No text annotation | ||
IL_5WYK_016 | Isolated cWS basepair | ||
IL_5WYK_081 | Isolated cWS basepair | ||
IL_5WYK_082 | No text annotation | ||
IL_5WYK_024 | No text annotation | ||
IL_5WYK_083 | No text annotation | ||
IL_5WYK_084 | No text annotation | ||
IL_5WYK_086 | Triple sheared | ||
IL_5WYK_087 | Isolated non-canonical cWW pair | ||
IL_5WYK_056 | Tandem non-canonical cWW pairs | ||
IL_5WYK_066 | No text annotation | ||
IL_5WYK_088 | No text annotation | ||
IL_5WYK_069 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_5WYK_001 | 1/3A/106:111, 1/3A/259:263, 1/3A/308:309 | No text annotation | ||
J3_5WYK_005 | 1/3A/106:111, 1/3A/259:265, 1/3A/306:309 | No text annotation | ||
J3_5WYK_002 | 1/SA/633:635, 1/SA/861:865, 1/SA/965:966 | No text annotation | geometric J3_4V88_080 NA | |
J3_5WYK_006 | 1/SA/633:635, 1/SA/861:866, 1/SA/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
J3_5WYK_003 | 1/SA/881:884, 1/SA/928:936, 1/SA/943:947 | No text annotation | homologous J3_4V88_033 NA | |
J3_5WYK_007 | 1/SA/1161:1164, 1/SA/1581:1587, 1/SA/1609:1616 | No text annotation | homologous J3_8C3A_038 NA | |
J3_5WYK_004 | 1/SA/1168:1171, 1/SA/1468:1470, 1/SA/1574:1577 | No text annotation | homologous J3_8C3A_039 NA | |
J4_5WYK_001 | 1/SA/98:107, 1/SA/307:309, 1/SA/357:361, 1/SA/383:385 | No text annotation | ||
J5_5WYK_001 | 1/SA/31:35, 1/SA/473:479, 1/SA/509:516, 1/SA/536:546, 1/SA/592:595 | No text annotation | ||
J5_5WYK_002 | 1/SA/124:143, 1/SA/172:182, 1/SA/203:206, 1/SA/259:265, 1/SA/289:293 | No text annotation |
Problematic loops
No problematic loops
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