RNA 3D Hub //

5WYK Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5WYK_0041/5A/120:125No text annotation
HL_5WYK_0051/5A/196:201GNRA
geometric
HL_5TBW_017
NA
HL_5WYK_0071/5A/360:365GNRA related
geometric
HL_5J7L_179
HL_04783.2
HL_5WYK_0321/5A/513:523No text annotation
HL_5WYK_0091/5A/515:522No text annotation
geometric
HL_4PQV_003
HL_97917.2
HL_5WYK_0111/SA/154:160No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_5WYK_0121/SA/190:195No text annotation
homologous
HL_8P9A_193
HL_53890.2
HL_5WYK_0141/SA/276:279Mini UNCG
geometric
HL_5TBW_071
NA
HL_5WYK_0151/SA/330:338GNRA related
homologous
HL_4V88_193
NA
HL_5WYK_0161/SA/368:373No text annotation
HL_5WYK_0171/SA/393:404No text annotation
homologous
HL_4V88_195
NA
HL_5WYK_0181/SA/414:419UNCG
homologous
HL_4V88_196
NA
HL_5WYK_0191/SA/450:456No text annotation
homologous
HL_4V88_197
NA
HL_5WYK_0201/SA/491:496No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_5WYK_0211/SA/520:532No text annotation
homologous
HL_4V88_199
NA
HL_5WYK_0221/SA/569:574Externally structured
geometric
HL_8C3A_022
NA
HL_5WYK_0241/SA/900:909No text annotation
homologous
HL_4V88_206
NA
HL_5WYK_0251/SA/937:942GNRA
homologous
HL_4V88_207
NA
HL_5WYK_0261/SA/1055:1064No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_5WYK_0281/SA/1501:1506GNRA
homologous
HL_4V88_218
NA
HL_5WYK_0291/SA/1594:1602No text annotation
HL_5WYK_0311/SA/1802:1807GNRA variation
geometric
HL_5J7L_180
HL_37824.8

Problematic loops

#loop idProblemSequence
HL_5WYK_001No text annotation
HL_5WYK_002No text annotation
HL_5WYK_003No text annotation
HL_5WYK_006No text annotation
HL_5WYK_008No text annotation
HL_5WYK_010No text annotation
HL_5WYK_013No text annotation
HL_5WYK_023No text annotation
HL_5WYK_027No text annotation
HL_5WYK_030No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5WYK_0011/3A/1:4,
1/SA/1120:1123		Tandem non-canonical cWW pairs
geometric
IL_1MFQ_004
IL_85033.2
IL_5WYK_0771/3A/2:6,
1/SA/1118:1122		No text annotation
IL_5WYK_0021/3A/4:6,
1/SA/1118:1120		Isolated non-canonical cWW pair
geometric
IL_1YZ9_002
IL_87907.2
IL_5WYK_0031/3A/48:50,
1/5A/468:470		Self complementary
geometric
IL_5E81_371
NA
IL_5WYK_0041/3A/50:52,
1/5A/466:468		Isolated non-canonical cWW pair
geometric
IL_3SZX_003
IL_87907.2
IL_5WYK_0051/3A/78:85,
1/3A/325:329		No text annotation
IL_5WYK_0061/3A/97:98,
1/3A/317:319		No text annotation
IL_5WYK_0071/5A/11:15,
1/5A/66:71		No text annotation
IL_5WYK_0081/5A/16:18,
1/5A/62:65		No text annotation
geometric
IL_4N0T_004
IL_99358.1
IL_5WYK_0091/5A/94:95,
1/5A/149:156		Multiple bulged bases
geometric
IL_1R3E_001
IL_84476.1
IL_5WYK_0101/5A/97:99,
1/5A/145:147		Isolated cWH basepair
geometric
IL_4J50_003
IL_10167.6
IL_5WYK_0111/5A/100:104,
1/5A/140:144		No text annotation
IL_5WYK_0891/5A/107:110,
1/5A/136:137		Multiple bulged bases
geometric
IL_1R3E_001
IL_84476.1
IL_5WYK_0131/5A/115:120,
1/5A/125:131		No text annotation
IL_5WYK_0141/5A/167:172,
1/5A/224:228		No text annotation
IL_5WYK_0801/5A/174:178,
1/5A/219:222		No text annotation
IL_5WYK_0151/5A/175:178,
1/5A/219:221		No text annotation
IL_5WYK_0171/5A/187:189,
1/5A/208:210		Isolated cWH basepair
geometric
IL_4KQ0_003
IL_10167.6
IL_5WYK_0181/5A/246:247,
1/5A/265:267		Single bulged U
geometric
IL_4LFB_046
IL_89505.4
IL_5WYK_0191/5A/336:341,
1/5A/384:387		No text annotation
IL_5WYK_0201/5A/342:343,
1/5A/381:383		Single bulged U
geometric
IL_3WBM_001
IL_89505.4
IL_5WYK_0211/5A/346:349,
1/5A/375:378		Tandem non-canonical cWW pairs
geometric
IL_5TBW_128
NA
IL_5WYK_0221/5A/352:356,
1/5A/369:372		No text annotation
IL_5WYK_0901/5A/352:357,
1/5A/368:372		No text annotation
IL_5WYK_0231/5A/395:397,
1/5A/460:462		Isolated non-canonical cWW pair
geometric
IL_3IVK_002
IL_87907.2
IL_5WYK_0911/5A/402:406,
1/5A/450:455		No text annotation
IL_5WYK_0251/5A/413:414,
1/5A/440:443		Minor groove platform
geometric
IL_4LFB_054
IL_51454.3
IL_5WYK_0261/5A/501:503,
1/5A/533:537		No text annotation
IL_5WYK_0271/5A/505:507,
1/5A/529:531		Isolated non-canonical cWW contact
geometric
IL_5UNE_001
IL_44465.1
IL_5WYK_0281/5A/513:515,
1/5A/522:523		Single stack bend
geometric
IL_7KGA_006
IL_26793.1
IL_5WYK_0291/5A/550:552,
1/5A/585:587		Isolated non-canonical cWW pair
geometric
IL_4V88_419
NA
IL_5WYK_0301/5A/555:558,
1/5A/579:582		Tandem non-canonical cWW pairs
geometric
IL_4V88_432
NA
IL_5WYK_0311/5A/559:561,
1/5A/576:578		Isolated non-canonical cWW pair
geometric
IL_4E48_006
IL_87907.2
IL_5WYK_0321/SA/24:26,
1/SA/600:601		No text annotation
IL_5WYK_0331/SA/50:52,
1/SA/428:429		Minor groove platform
homologous
IL_4V88_388
NA
IL_5WYK_0341/SA/109:112,
1/SA/302:305		Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_5WYK_0351/SA/113:116,
1/SA/300:301		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_5WYK_0361/SA/117:122,
1/SA/295:299		No text annotation
homologous
IL_4V88_393
NA
IL_5WYK_0371/SA/144:149,
1/SA/165:171		tWH-tWH-tHW-tHW
geometric
IL_4LFB_009
IL_12745.1
IL_5WYK_0381/SA/150:152,
1/SA/162:164		Isolated non-canonical cWW pair
geometric
IL_1RPU_001
IL_87907.2
IL_5WYK_0391/SA/186:189,
1/SA/196:199		Double sheared
homologous
IL_4V88_396
NA
IL_5WYK_0401/SA/204:206,
1/SA/259:263		Major groove platform with extra cWW
geometric
IL_1MMS_002
IL_51387.3
IL_5WYK_0411/SA/206:208,
1/SA/257:259		No text annotation
IL_5WYK_0921/SA/206:209,
1/SA/256:259		Tandem non-canonical cWW pairs
geometric
IL_4EYA_008
IL_51479.1
IL_5WYK_0421/SA/265:267,
1/SA/288:289		Single bulged A
homologous
IL_8P9A_388
IL_31462.7
IL_5WYK_0431/SA/270:273,
1/SA/283:285		No text annotation
IL_5WYK_0441/SA/275:276,
1/SA/279:281		No text annotation
IL_5WYK_0451/SA/311:316,
1/SA/348:355		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_5WYK_0461/SA/318:323,
1/SA/345:346		No text annotation
homologous
IL_8P9A_392
IL_47074.2
IL_5WYK_0471/SA/363:365,
1/SA/376:381		No text annotation
IL_5WYK_0481/SA/389:391,
1/SA/406:408		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_5WYK_0491/SA/443:447,
1/SA/460:461		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_5WYK_0501/SA/447:448,
1/SA/458:460		Single bulged G
geometric
IL_3NDB_004
IL_00225.14
IL_5WYK_0511/SA/480:485,
1/SA/502:508		No text annotation
IL_5WYK_0851/SA/480:488,
1/SA/499:508		No text annotation
IL_5WYK_0521/SA/517:520,
1/SA/532:535		Double sheared
geometric
IL_1SA9_002
IL_09705.15
IL_5WYK_0531/SA/557:559,
1/SA/586:587		No text annotation
IL_5WYK_0541/SA/627:631,
1/SA/968:972		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_5WYK_0551/SA/865:866,
1/SA/962:965		Major groove platform; stack outside cWW
geometric
IL_6N5P_003
IL_50694.7
IL_5WYK_0931/SA/868:869,
1/SA/958:960		Single bulged U
geometric
IL_2A64_002
IL_89505.4
IL_5WYK_0571/SA/871:873,
1/SA/954:956		Isolated non-canonical cWW pair
geometric
IL_2R8S_001
IL_87907.2
IL_5WYK_0581/SA/874:878,
1/SA/950:953		Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_5WYK_0591/SA/885:888,
1/SA/924:927		Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_5WYK_0601/SA/893:899,
1/SA/910:919		Kink-turn related
homologous
IL_8C3A_440
NA
IL_5WYK_0611/SA/1041:1044,
1/SA/1074:1077		Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_5WYK_0621/SA/1051:1053,
1/SA/1066:1067		No text annotation
IL_5WYK_0631/SA/1149:1151,
1/SA/1627:1628		Single bulged G
homologous
IL_4V88_442
NA
IL_5WYK_0641/SA/1157:1161,
1/SA/1616:1621		No text annotation
IL_5WYK_0651/SA/1173:1175,
1/SA/1464:1466		Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_5WYK_0671/SA/1495:1498,
1/SA/1509:1512		Tandem non-canonical cWW pairs
homologous
IL_4V88_461
NA
IL_5WYK_0681/SA/1642:1644,
1/SA/1757:1759		Isolated non-canonical cWW pair
geometric
IL_4LFB_010
IL_87907.2
IL_5WYK_0941/SA/1644:1647,
1/SA/1753:1757		No text annotation
IL_5WYK_0701/SA/1650:1652,
1/SA/1748:1750		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_5WYK_0711/SA/1653:1656,
1/SA/1744:1747		Double sheared
geometric
IL_5AOX_003
IL_09705.15
IL_5WYK_0721/SA/1656:1658,
1/SA/1743:1744		No text annotation
IL_5WYK_0731/SA/1665:1667,
1/SA/1734:1736		Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_5WYK_0741/SA/1669:1672,
1/SA/1729:1732		Double sheared
homologous
IL_4V88_471
NA
IL_5WYK_0751/SA/1672:1674,
1/SA/1727:1729		Isolated non-canonical cWW pair
geometric
IL_5TBW_378
NA
IL_5WYK_0761/SA/1675:1678,
1/SA/1723:1726		Tandem non-canonical cWW pairs
homologous
IL_4V88_473
NA

Problematic loops

#loop idProblemSequence
IL_5WYK_078No text annotation
IL_5WYK_012Isolated non-canonical cWW pair
IL_5WYK_079No text annotation
IL_5WYK_016Isolated cWS basepair
IL_5WYK_081Isolated cWS basepair
IL_5WYK_082No text annotation
IL_5WYK_024No text annotation
IL_5WYK_083No text annotation
IL_5WYK_084No text annotation
IL_5WYK_086Double sheared with non-canonical cWW
IL_5WYK_087Isolated non-canonical cWW pair
IL_5WYK_056Tandem non-canonical cWW pairs
IL_5WYK_066No text annotation
IL_5WYK_088No text annotation
IL_5WYK_069No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5WYK_0011/3A/106:111,
1/3A/259:263,
1/3A/308:309		No text annotation
J3_5WYK_0051/3A/106:111,
1/3A/259:265,
1/3A/306:309		No text annotation
J3_5WYK_0021/SA/633:635,
1/SA/861:865,
1/SA/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_5WYK_0061/SA/633:635,
1/SA/861:866,
1/SA/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.4
J3_5WYK_0031/SA/881:884,
1/SA/928:936,
1/SA/943:947		No text annotation
homologous
J3_4V88_033
NA
J3_5WYK_0071/SA/1161:1164,
1/SA/1581:1587,
1/SA/1609:1616		No text annotation
homologous
J3_8C3A_038
NA
J3_5WYK_0041/SA/1168:1171,
1/SA/1468:1470,
1/SA/1574:1577		No text annotation
homologous
J3_8C3A_039
NA
J4_5WYK_0011/SA/98:107,
1/SA/307:309,
1/SA/357:361,
1/SA/383:385		No text annotation
J5_5WYK_0011/SA/31:35,
1/SA/473:479,
1/SA/509:516,
1/SA/536:546,
1/SA/592:595		No text annotation
J5_5WYK_0021/SA/124:143,
1/SA/172:182,
1/SA/203:206,
1/SA/259:265,
1/SA/289:293		No text annotation

Problematic loops

No problematic loops


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