RNA 3D Hub //

5WYK Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5WYK_0201/SA/491:496No text annotation
geometric
HL_5U3G_001
NA
HL_5WYK_0211/SA/520:532No text annotation
homologous
HL_4V88_199
NA
HL_5WYK_0241/SA/900:909No text annotation
homologous
HL_4V88_206
NA
HL_5WYK_0251/SA/937:942GNRA
homologous
HL_4V88_207
NA
HL_5WYK_0291/SA/1594:1602No text annotation

Problematic loops

#loop idProblemSequence
HL_5WYK_001No text annotation
HL_5WYK_002No text annotation
HL_5WYK_003No text annotation
HL_5WYK_004No text annotation
HL_5WYK_005GNRA
HL_5WYK_006No text annotation
HL_5WYK_007GNRA related
HL_5WYK_008No text annotation
HL_5WYK_032No text annotation
HL_5WYK_009No text annotation
HL_5WYK_010No text annotation
HL_5WYK_011No text annotation
HL_5WYK_012No text annotation
HL_5WYK_013No text annotation
HL_5WYK_014Mini UNCG
HL_5WYK_015GNRA related
HL_5WYK_016No text annotation
HL_5WYK_017No text annotation
HL_5WYK_018UNCG
HL_5WYK_019No text annotation
HL_5WYK_022Externally structured
HL_5WYK_023No text annotation
HL_5WYK_026No text annotation
HL_5WYK_027No text annotation
HL_5WYK_028GNRA
HL_5WYK_030No text annotation
HL_5WYK_031GNRA variation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5WYK_0031/3A/48:50,
1/5A/468:470		Self complementary
geometric
IL_5E81_371
NA
IL_5WYK_0041/3A/50:52,
1/5A/466:468		Isolated non-canonical cWW pair
geometric
IL_3SZX_003
IL_01003.1
IL_5WYK_0051/3A/78:85,
1/3A/325:329		No text annotation
IL_5WYK_0091/5A/94:95,
1/5A/149:156		Multiple bulged bases
geometric
IL_1R3E_001
IL_44609.1
IL_5WYK_0101/5A/97:99,
1/5A/145:147		Isolated cWH basepair
geometric
IL_4J50_003
IL_10892.1
IL_5WYK_0181/5A/246:247,
1/5A/265:267		Single bulged U
geometric
IL_4LFB_046
IL_97561.1
IL_5WYK_0191/5A/336:341,
1/5A/384:387		No text annotation
IL_5WYK_0211/5A/346:349,
1/5A/375:378		Tandem non-canonical cWW pairs
geometric
IL_5TBW_128
NA
IL_5WYK_0901/5A/352:357,
1/5A/368:372		No text annotation
IL_5WYK_0231/5A/395:397,
1/5A/460:462		Isolated non-canonical cWW pair
geometric
IL_3IVK_002
IL_01003.1
IL_5WYK_0911/5A/402:406,
1/5A/450:455		No text annotation
IL_5WYK_0261/5A/501:503,
1/5A/533:537		No text annotation
IL_5WYK_0481/SA/389:391,
1/SA/406:408		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_5WYK_0851/SA/480:488,
1/SA/499:508		No text annotation
IL_5WYK_0531/SA/557:559,
1/SA/586:587		No text annotation
IL_5WYK_0541/SA/627:631,
1/SA/968:972		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_5WYK_0551/SA/865:866,
1/SA/962:965		Major groove platform; stack outside cWW
geometric
IL_6N5P_003
IL_74641.1
IL_5WYK_0931/SA/868:869,
1/SA/958:960		Single bulged U
geometric
IL_2A64_002
NA
IL_5WYK_0571/SA/871:873,
1/SA/954:956		Isolated non-canonical cWW pair
geometric
IL_2R8S_001
IL_01003.1
IL_5WYK_0581/SA/874:878,
1/SA/950:953		Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_5WYK_0591/SA/885:888,
1/SA/924:927		Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_5WYK_0601/SA/893:899,
1/SA/910:919		Kink-turn related
homologous
IL_8C3A_440
NA
IL_5WYK_0611/SA/1041:1044,
1/SA/1074:1077		Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_5WYK_0621/SA/1051:1053,
1/SA/1066:1067		No text annotation
IL_5WYK_0641/SA/1157:1161,
1/SA/1616:1621		No text annotation
IL_5WYK_0651/SA/1173:1175,
1/SA/1464:1466		Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA

Problematic loops

#loop idProblemSequence
IL_5WYK_001Tandem non-canonical cWW pairs
IL_5WYK_077No text annotation
IL_5WYK_002Isolated non-canonical cWW pair
IL_5WYK_078No text annotation
IL_5WYK_006No text annotation
IL_5WYK_007No text annotation
IL_5WYK_008No text annotation
IL_5WYK_011No text annotation
IL_5WYK_089Multiple bulged bases
IL_5WYK_012Isolated non-canonical cWW pair
IL_5WYK_013No text annotation
IL_5WYK_079No text annotation
IL_5WYK_014No text annotation
IL_5WYK_080No text annotation
IL_5WYK_015No text annotation
IL_5WYK_016Isolated cWS basepair
IL_5WYK_017Isolated cWH basepair
IL_5WYK_081Isolated cWS basepair
IL_5WYK_020Single bulged U
IL_5WYK_022No text annotation
IL_5WYK_082No text annotation
IL_5WYK_024No text annotation
IL_5WYK_025Minor groove platform
IL_5WYK_027Isolated non-canonical cWW contact
IL_5WYK_028Single stack bend
IL_5WYK_029Isolated non-canonical cWW pair
IL_5WYK_030Tandem non-canonical cWW pairs
IL_5WYK_031Isolated non-canonical cWW pair
IL_5WYK_032No text annotation
IL_5WYK_033Minor groove platform
IL_5WYK_034Tandem non-canonical cWW pairs
IL_5WYK_035Multiple bulged bases
IL_5WYK_036No text annotation
IL_5WYK_037tWH-tWH-tHW-tHW
IL_5WYK_038Isolated non-canonical cWW pair
IL_5WYK_039Double sheared
IL_5WYK_040Major groove platform with extra cWW
IL_5WYK_041No text annotation
IL_5WYK_092Tandem non-canonical cWW pairs
IL_5WYK_083No text annotation
IL_5WYK_042Single bulged A
IL_5WYK_043No text annotation
IL_5WYK_084No text annotation
IL_5WYK_044No text annotation
IL_5WYK_045Kink-turn with non-sequential stacking
IL_5WYK_046No text annotation
IL_5WYK_047No text annotation
IL_5WYK_049C-loop
IL_5WYK_050Single bulged G
IL_5WYK_051No text annotation
IL_5WYK_086Double sheared with non-canonical cWW
IL_5WYK_052Double sheared
IL_5WYK_087Isolated non-canonical cWW pair
IL_5WYK_056Tandem non-canonical cWW pairs
IL_5WYK_063Single bulged G
IL_5WYK_066No text annotation
IL_5WYK_067Tandem non-canonical cWW pairs
IL_5WYK_068Isolated non-canonical cWW pair
IL_5WYK_094No text annotation
IL_5WYK_088No text annotation
IL_5WYK_069No text annotation
IL_5WYK_070Isolated non-canonical cWW pair
IL_5WYK_071Double sheared
IL_5WYK_072No text annotation
IL_5WYK_073Isolated non-canonical cWW pair
IL_5WYK_074Double sheared
IL_5WYK_075Isolated non-canonical cWW pair
IL_5WYK_076Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5WYK_0021/SA/633:635,
1/SA/861:865,
1/SA/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_5WYK_0061/SA/633:635,
1/SA/861:866,
1/SA/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.5
J3_5WYK_0031/SA/881:884,
1/SA/928:936,
1/SA/943:947		No text annotation
homologous
J3_4V88_033
NA
J3_5WYK_0071/SA/1161:1164,
1/SA/1581:1587,
1/SA/1609:1616		No text annotation
homologous
J3_8C3A_038
NA
J3_5WYK_0041/SA/1168:1171,
1/SA/1468:1470,
1/SA/1574:1577		No text annotation
homologous
J3_8C3A_039
NA
J5_5WYK_0011/SA/31:35,
1/SA/473:479,
1/SA/509:516,
1/SA/536:546,
1/SA/592:595		No text annotation

Problematic loops

#loop idProblemSequence
J3_5WYK_001No text annotation
J3_5WYK_005No text annotation
J4_5WYK_001No text annotation
J5_5WYK_002No text annotation

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