7D5T Summary
- Structure Title
- 7D5T Summary
- Authors
- Du, Y., Zhang, J., An, W., Ye, K.
- Release Date
- 2021-10-06
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 6.0 Å
- Chains
-
- 3 RNA chains from Saccharomyces cerevisiae S288C
- 52 other chains
- Compounds
- U3 snoRNA, rRNA 2'-O-methyltransferase fibrillarin, rRNA 2'-O-methyltransferase fibrillarin, Nucleolar protein 56, Nucleolar protein 58, Ribosomal RNA-processing protein 9, 13 kDa ribonucleoprotein-associated protein, 13 kDa ribonucleoprotein-associated protein, 5' ETS, U3 small nucleolar RNA-associated protein 7, U3 small nucleolar RNA-associated protein 11, U3 small nucleolar RNA-associated protein MPP10, U3 small nucleolar ribonucleoprotein protein IMP3, U3 small nucleolar ribonucleoprotein protein IMP4, Something about silencing protein 10, Protein SOF1, rRNA-processing protein FCF2, rRNA-processing protein FCF1, U3 small nucleolar RNA-associated protein 5, U3 small nucleolar RNA-associated protein 10, NET1-associated nuclear protein 1, Periodic tryptophan protein 2, U3 small nucleolar RNA-associated protein 12, U3 small nucleolar RNA-associated protein 13, U3 small nucleolar RNA-associated protein 6, U3 small nucleolar RNA-associated protein 18, U3 small nucleolar RNA-associated protein 21, rRNA biogenesis protein RRP5, U3 small nucleolar RNA-associated protein 22, Ribosomal RNA-processing protein 7, Ribosome biogenesis protein BMS1, RNA 3'-terminal phosphate cyclase-like protein, Nucleolar complex protein 14, U3 small nucleolar RNA-associated protein 20, U3 small nucleolar RNA-associated protein 14, Pno1, Probable ATP-dependent RNA helicase DHR1, 18S rRNA, 40S ribosomal protein S1-A, 40S ribosomal protein S4-A, 40S ribosomal protein S5, 40S ribosomal protein S6-A, 40S ribosomal protein S7-A, 40S ribosomal protein S8-A, 40S ribosomal protein S9-A, 40S ribosomal protein S11-A, 40S ribosomal protein S13, 40S ribosomal protein S14-A, 40S ribosomal protein S16-A, 40S ribosomal protein S22-B, 40S ribosomal protein S23-A, 40S ribosomal protein S24-A, 40S ribosomal protein S27-A, 40S ribosomal protein S28-A, Unassigned peptides 1
Pairwise Interactions
Interactions annotated by FR3D:- 397 base-pairs
- 1,195 base-stacking
- 503 base-phosphate
- 45 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 7D5T contains:- 59 internal loops from 0 motif groups
- 26 hairpin loops from 0 motif groups
- 7 three-way junctions
3D Redundancy
7D5T has chains which belong to the following equivalence classes in the current representative set:- NR_20.0_47865.1 (1)
- NR_20.0_03510.54 (1)
- NR_all_47865.1 (1)
- NR_all_03510.54 (1)