7D5T Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7D5T_013 | 1/SA/764:772 | No text annotation | homologous HL_4V88_203 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7D5T_001 | No text annotation | ||
| HL_7D5T_002 | GNRA related | ||
| HL_7D5T_003 | No text annotation | ||
| HL_7D5T_004 | UNCG | ||
| HL_7D5T_005 | T-loop with 1 bulged base | ||
| HL_7D5T_006 | Mini UNCG | ||
| HL_7D5T_007 | GNRA related | ||
| HL_7D5T_008 | No text annotation | ||
| HL_7D5T_009 | No text annotation | ||
| HL_7D5T_010 | No text annotation | ||
| HL_7D5T_011 | No text annotation | ||
| HL_7D5T_012 | Mini UNCG | ||
| HL_7D5T_014 | No text annotation | ||
| HL_7D5T_015 | No text annotation | ||
| HL_7D5T_016 | No text annotation | ||
| HL_7D5T_017 | GNRA | ||
| HL_7D5T_018 | No text annotation | ||
| HL_7D5T_019 | No text annotation | ||
| HL_7D5T_020 | No text annotation | ||
| HL_7D5T_021 | No text annotation | ||
| HL_7D5T_022 | No text annotation | ||
| HL_7D5T_023 | No text annotation | ||
| HL_7D5T_024 | Purine riboswitch | ||
| HL_7D5T_025 | No text annotation | ||
| HL_7D5T_026 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7D5T_001 | Single bulged G | ||
| IL_7D5T_002 | Single stack bend | ||
| IL_7D5T_003 | No text annotation | ||
| IL_7D5T_004 | No text annotation | ||
| IL_7D5T_060 | No text annotation | ||
| IL_7D5T_005 | No text annotation | ||
| IL_7D5T_006 | No text annotation | ||
| IL_7D5T_007 | No text annotation | ||
| IL_7D5T_008 | No text annotation | ||
| IL_7D5T_009 | No text annotation | ||
| IL_7D5T_010 | No text annotation | ||
| IL_7D5T_011 | Isolated non-canonical cWW pair | ||
| IL_7D5T_012 | Triple sheared related | ||
| IL_7D5T_013 | Minor groove platform | ||
| IL_7D5T_014 | No text annotation | ||
| IL_7D5T_015 | Tandem non-canonical cWW pairs | ||
| IL_7D5T_016 | Multiple bulged bases | ||
| IL_7D5T_017 | No text annotation | ||
| IL_7D5T_018 | tWH-tWH-tHW-tHW | ||
| IL_7D5T_067 | No text annotation | ||
| IL_7D5T_019 | Tandem non-canonical cWW pairs | ||
| IL_7D5T_020 | Double sheared | ||
| IL_7D5T_021 | No text annotation | ||
| IL_7D5T_022 | Single bulged A | ||
| IL_7D5T_023 | No text annotation | ||
| IL_7D5T_024 | Single bulged U | ||
| IL_7D5T_025 | Kink-turn with non-sequential stacking | ||
| IL_7D5T_026 | No text annotation | ||
| IL_7D5T_027 | Single bulged U | ||
| IL_7D5T_028 | C-loop | ||
| IL_7D5T_029 | Single bulged G | ||
| IL_7D5T_030 | Other IL | ||
| IL_7D5T_061 | No text annotation | ||
| IL_7D5T_031 | Isolated tHS basepair with bulges | ||
| IL_7D5T_032 | Minor groove platform with extra cWW | ||
| IL_7D5T_062 | Minor groove platform | ||
| IL_7D5T_033 | Minor groove platform | ||
| IL_7D5T_034 | No text annotation | ||
| IL_7D5T_035 | No text annotation | ||
| IL_7D5T_036 | Isolated non-canonical cWW pair | ||
| IL_7D5T_037 | No text annotation | ||
| IL_7D5T_038 | Single stack bend | ||
| IL_7D5T_039 | Isolated non-canonical cWW pair | ||
| IL_7D5T_040 | Single stack bend | ||
| IL_7D5T_041 | No text annotation | ||
| IL_7D5T_042 | Tandem non-canonical cWW pairs | ||
| IL_7D5T_043 | Major groove platform; stack outside cWW | ||
| IL_7D5T_044 | No text annotation | ||
| IL_7D5T_068 | Isolated cWH basepair | ||
| IL_7D5T_045 | Isolated non-canonical cWW pair | ||
| IL_7D5T_046 | Tandem non-canonical cWW pairs | ||
| IL_7D5T_047 | Tandem non-canonical cWW pairs | ||
| IL_7D5T_048 | Kink-turn related | ||
| IL_7D5T_049 | Tandem non-canonical cWW pairs | ||
| IL_7D5T_050 | Single stack bend | ||
| IL_7D5T_051 | C-loop | ||
| IL_7D5T_063 | Double sheared with near cWW | ||
| IL_7D5T_052 | Double sheared | ||
| IL_7D5T_053 | Isolated non-canonical cWW pair | ||
| IL_7D5T_054 | Tandem non-canonical cWW pairs | ||
| IL_7D5T_055 | Tandem non-canonical cWW pairs | ||
| IL_7D5T_069 | Isolated non-canonical cWW pair | ||
| IL_7D5T_064 | No text annotation | ||
| IL_7D5T_056 | Double sheared | ||
| IL_7D5T_057 | Isolated non-canonical cWW pair | ||
| IL_7D5T_070 | No text annotation | ||
| IL_7D5T_065 | No text annotation | ||
| IL_7D5T_058 | Single stack bend | ||
| IL_7D5T_066 | Isolated tWW contact | ||
| IL_7D5T_059 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7D5T_001 | No text annotation | ||
| J3_7D5T_008 | No text annotation | ||
| J3_7D5T_002 | No text annotation | ||
| J3_7D5T_003 | No text annotation | ||
| J3_7D5T_009 | No text annotation | ||
| J3_7D5T_012 | No text annotation | ||
| J3_7D5T_010 | No text annotation | ||
| J3_7D5T_004 | No text annotation | ||
| J3_7D5T_005 | No text annotation | ||
| J3_7D5T_011 | No text annotation | ||
| J3_7D5T_006 | No text annotation | ||
| J3_7D5T_007 | No text annotation | ||
| J5_7D5T_001 | No text annotation | ||
| J5_7D5T_002 | No text annotation |
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