7SYT Summary
- Structure title
- Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)
- Authors
- Brown, Z.P., Abaeva, I.S., De, S., Hellen, C.U.T., Pestova, T.V., Frank, J.
- Release date
- 2022-07-13
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
- Chains
- 3 RNA chains from Oryctolagus cuniculus, Hepatitis C virus (isolate 1)
- 34 other chains
- Nucleic acid compounds
- Other compounds
- 18S rRNA, Met-tRNA-i-Met, HCV IRES
- 40S ribosomal protein SA, eS1, uS5 (S2), uS3, 40S ribosomal protein S4, uS7, eS6, 40S ribosomal protein S7, eS8, uS4, S10_plectin domain-containing protein, uS17, eS12, uS15, uS11, uS19, uS9, eS17, uS13, eS19, uS10, 40S ribosomal protein S21, uS8, uS12, 40S ribosomal protein S24, 40S ribosomal protein S25, eS26 (S26), eS27, eS28, eS29, eS30, 40S ribosomal protein S27a, RACK1, 60s ribosomal protein l41
Pairwise Interactions
Interactions annotated by FR3D:- 574 base-pairs
- 1,733 base-stacking
- 31 base-phosphate
- 35 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 7SYT contains:- 47 hairpin loops from 0 motif groups
- 109 internal loops from 0 motif groups
- 31 junction loops from 0 motif groups
3D Redundancy
7SYT has chains which belong to the following equivalence classes in the current representative set:- NR_all_21280.37 (1)
- NR_all_77343.5 (1)
- NR_all_12406.5 (1)
- NR_20.0_21280.37 (1)
- NR_20.0_77343.5 (1)
- NR_20.0_12406.5 (1)
Similar structures
4KZY 4KZZ 4KZX 7O7Y 7O7Z 7OYD 8SCB 7ZJW 9QQA 7O80 8P2K 7JQB 7UCK 9BDL 9F1B 6SGC 7TOR 8P03 7O81 7ZJX 9C8K 7NWI 7UCJ 6YAL 8BHF 9F1D 6R5Q 9BDN 7TOQ 6ZVK 6P5I 6P5K 6P5J 6P4G 7MDZ 6R6P 6P4H 6P5N 6D9J 8VFT 7JQC 8BTK 9QQB 6W2T 8P09 7A01 5LZS 6MTD 5LZV 6D90 6MTC 6MTE 7SYS 6YAN 6W2S 6GZ5 7SYR 5LZZ 9F1C 5LZW 6GZ3 7SYX 7SYW 6MTB 7NWG 9BDP 6GZ4 5LZT 6YAM 5LZX 6HCJ 7SYQ 6R6G 5LZU 6HCF 7SYV 6R7Q 3JAH 7SYN 7SYP 7NWH 5FLX 5LZY 3JAG 3JAI 7SYG 7SYK 7SYI 7SYL 7SYU 7SYH 7SYO 7SYM 7SYJ 5K0Y 6HCQ 6HCM 4UJE 3JAN 3JAJ 4UJD 4D61 4D5L 4UJCStructures from NR_all_21280.37