HL_10PX_143

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CAAGAG

Length

6 nucleotides

Bulged bases

10PX|1|2A|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10PX_143 not in the Motif Atlas

Homologous match to HL_7A0S_073

Geometric discrepancy: 0.2347

The information below is about HL_7A0S_073

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

10PX|1|2A|C|1631
10PX|1|2A|A|1631|||A
10PX|1|2A|A|1632
10PX|1|2A|G|1633
10PX|1|2A|A|1634
10PX|1|2A|G|1635

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains