HL_10QM_006

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

10QM|1|I|A|196, 10QM|1|I|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10QM_006 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.1086

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

10QM|1|I|G|194
10QM|1|I|A|195
10QM|1|I|A|196
10QM|1|I|A|197
10QM|1|I|C|198
10QM|1|I|A|199
10QM|1|I|U|200
10QM|1|I|C|201

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein uL15

Chain f

50S ribosomal protein L28