HL_10QM_008

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10QM_008 not in the Motif Atlas

Homologous match to HL_7A0S_008

Geometric discrepancy: 0.108

The information below is about HL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.4

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

10QM|1|I|C|246
10QM|1|I|G|247
10QM|1|I|G|248
10QM|1|I|C|249
10QM|1|I|G|250
10QM|1|I|A|251
10QM|1|I|G|252

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein uL15

Chain l

Large ribosomal subunit protein bL35