HL_10QM_009

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

10QM|1|I|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10QM_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1239

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.5

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

10QM|1|I|C|305
10QM|1|I|U|306
10QM|1|I|G|307
10QM|1|I|G|308
10QM|1|I|A|309
10QM|1|I|A|310
10QM|1|I|A|311
10QM|1|I|G|312

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L24