HL_10QM_011

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

10QM|1|I|G|329, 10QM|1|I|A|330, 10QM|1|I|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10QM_011 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3715

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.6

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

10QM|1|I|G|327
10QM|1|I|U|328
10QM|1|I|G|329
10QM|1|I|A|330
10QM|1|I|C|331
10QM|1|I|A|332
10QM|1|I|G|333
10QM|1|I|C|334
10QM|1|I|C|335

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL4

Chain c

50S ribosomal protein L24