HL_10QM_018

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

10QM|1|I|A|613, 10QM|1|I|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10QM_018 not in the Motif Atlas

Geometric match to HL_9E6Q_019

Geometric discrepancy: 0.2638

The information below is about HL_9E6Q_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

10QM|1|I|C|611
10QM|1|I|G|612
10QM|1|I|A|613
10QM|1|I|A|614
10QM|1|I|U|615
10QM|1|I|A|616
10QM|1|I|G|617

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL4