HL_10QM_027

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

10QM|1|I|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10QM_027 not in the Motif Atlas

Homologous match to HL_1MMS_003

Geometric discrepancy: 0.3121

The information below is about HL_1MMS_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

10QM|1|I|C|1064
10QM|1|I|U|1065
10QM|1|I|U|1066
10QM|1|I|A|1067
10QM|1|I|G|1068
10QM|1|I|A|1069
10QM|1|I|A|1070
10QM|1|I|G|1071
10QM|1|I|C|1072
10QM|1|I|A|1073
10QM|1|I|G|1074

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain Q

Large ribosomal subunit protein uL11