HL_10QM_048

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

10QM|1|I|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10QM_048 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.1117

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

10QM|1|I|G|1949
10QM|1|I|G|1950
10QM|1|I|U|1951
10QM|1|I|A|1952
10QM|1|I|A|1953
10QM|1|I|G|1954
10QM|1|I|U|1955
10QM|1|I|U|1956
10QM|1|I|C|1957

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain S

Large ribosomal subunit protein uL14