HL_10QM_052

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

10QM|1|I|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10QM_052 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.0891

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

10QM|1|I|C|2248
10QM|1|I|U|2249
10QM|1|I|G|2250
10QM|1|I|OMG|2251
10QM|1|I|G|2252
10QM|1|I|G|2253
10QM|1|I|C|2254
10QM|1|I|G|2255
10QM|1|I|G|2256

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L16

Chain e

50S ribosomal protein L27