Motif HL_11974.5 Version HL_11974.5 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1J1U_002 | 1J1U | 0.5418 | 1 | tRNA anticodon loop | B | tRNA | A | 532 | C | 533 | G | 535 | U | 536 | A | 537 | G | 538 | A | 539 | U | 540 | cWW | ncWW | |
| 2 | HL_2AKE_002 | 2AKE | 0.4768 | 1 | tRNA anticodon loop | B | tRNA | A | 31 | C | 32 | C | 34 | C | 35 | A | 36 | G | 37 | A | 38 | U | 39 | cWW | ||
| 3 | HL_6UGG_005 | 6UGG | 0.4012 | 1 | tRNA anticodon loop | B | tRNA | C | 31 | C | 32 | G | 34 | U | 35 | C | 36 | A | 37 | C | 38 | G | 39 | cWW | ncWB | |
| 4 | HL_4LCK_002 | 4LCK | 0.5346 | 1 | tRNA anticodon loop | B | tRNA | C | 30 | U | 31 | G | 33 | C | 34 | C | 35 | A | 36 | A | 37 | G | 38 | cWW | ||
| 5 | HL_7A0S_052 | 7A0S | 0.1187 | 1 | LSU P loop | X | LSU rRNA | C | 2227 | U | 2228 | G | 2230 | G | 2231 | G | 2232 | C | 2233 | G | 2234 | G | 2235 | cWW | ||
| 6 | HL_4WF9_049 | 4WF9 | 0.0997 | 1 | LSU P loop | X | LSU rRNA | C | 2275 | U | 2276 | G | 2278 | G | 2279 | G | 2280 | C | 2281 | G | 2282 | G | 2283 | cWW | ||
| 7 | HL_9E6Q_051 | 9E6Q | 0.1318 | 1 | LSU P loop | 1 | LSU rRNA | C | 2359 | U | 2360 | OMG | 2362 | G | 2363 | G | 2364 | C | 2365 | OMG | 2366 | G | 2367 | cWW | ||
| 8 | HL_9PN5_052 | 9PN5 | 0.0890 | 1 | A1 | LSU rRNA | C | 2616 | U | 2617 | G | 2619 | G | 2620 | G | 2621 | C | 2622 | G | 2623 | G | 2624 | cWW | |||
| 9 | HL_8OI5_050 | 8OI5 | 0.0793 | 1 | LSU P loop | 1 | LSU rRNA | C | 2588 | U | 2589 | G | 2591 | G | 2592 | G | 2593 | C | 2594 | G | 2595 | G | 2596 | cWW | ||
| 10 | HL_9AXU_050 | 9AXU | 0.0622 | 1 | LSU P loop | 2 | LSU rRNA | C | 2711 | U | 2712 | G | 2714 | G | 2715 | G | 2716 | C | 2717 | G | 2718 | G | 2719 | cWW | ||
| 11 | HL_9SUM_047 | 9SUM | 0.0652 | 1 | A | LSU rRNA | C | 2516 | U | 2517 | G | 2519 | G | 2520 | G | 2521 | C | 2522 | G | 2523 | G | 2524 | cWW | |||
| 12 | HL_9H3G_055 | 9H3G | 0.0507 | 1 | A | LSU rRNA | C | 2615 | U | 2616 | OMG | 2618 | G | 2619 | G | 2620 | C | 2621 | G | 2622 | G | 2623 | cWW | |||
| 13 | HL_8GLP_059 | 8GLP | 0.0000 | 1 | LSU P loop | L5 | LSU rRNA | C | 4193 | U | 4194 | OMG | 4196 | G | 4197 | G | 4198 | C | 4199 | G | 4200 | G | 4201 | cWW | ||
| 14 | HL_8B0X_080 | 8B0X | 0.0624 | 1 | LSU P loop | a | LSU rRNA | C | 2252 | U | 2253 | OMG | 2255 | G | 2256 | G | 2257 | C | 2258 | G | 2259 | G | 2260 | cWW | ||
| 15 | HL_9DFE_051 | 9DFE | 0.0816 | 1 | LSU P loop | 1A | LSU rRNA | C | 2248 | U | 2249 | OMG | 2251 | G | 2252 | G | 2253 | C | 2254 | G | 2255 | G | 2256 | cWW | ||
| 16 | HL_4V9F_055 | 4V9F | 0.0922 | 1 | LSU P loop | 0 | LSU rRNA | C | 2281 | U | 2282 | G | 2284 | G | 2285 | G | 2286 | C | 2287 | G | 2288 | G | 2289 | cWW | ||
| 17 | HL_8GLP_099 | 8GLP | 0.6942 | 1 | S2 | SSU rRNA | U | 820 | PSU | 822 | U | 823 | C | 824 | A | 825 | A | 826 | A | 827 | G | 828 | cWW | tWH | ||
| 18 | HL_9PN5_092 | 9PN5 | 0.7207 | 1 | B5 | SSU rRNA | U | 764 | PSU | 766 | U | 767 | C | 768 | A | 769 | A | 770 | A | 771 | G | 772 | cWW | tWH | ||
| 19 | HL_8CRE_207 | 8CRE | 0.7285 | 1 | CM | SSU rRNA | U | 749 | U | 751 | U | 752 | C | 753 | A | 754 | A | 755 | A | 756 | G | 757 | cWW | tWH | ||
| 20 | HL_9SUM_085 | 9SUM | 0.7247 | 1 | CA | SSU rRNA | U | 735 | U | 737 | U | 738 | C | 739 | A | 740 | A | 741 | A | 742 | G | 743 | cWW | tWH | ||
| 21 | HL_9H3G_091 | 9H3G | 0.7535 | 1 | h1 | SSU rRNA | U | 767 | C | 769 | U | 770 | C | 771 | A | 772 | A | 773 | A | 774 | G | 775 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGGGGCGG | 7 |
| CUG(OMG)GGCGG | 2 |
| CUGGGCGG | 2 |
| UGUUCAAAG | 2 |
| ACUGUAGAU | 1 |
| ACUCCAGAU | 1 |
| CCUGUCACG | 1 |
| CUUGCCAAG | 1 |
| CUG(OMG)GGC(OMG)G | 1 |
| UGUCAAAG | 1 |
| UG(PSU)UCAAAG | 1 |
| UGCUCAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGGGCG | 7 |
| UG(OMG)GGCG | 4 |
| G(PSU)UCAAA | 2 |
| GUUCAAA | 2 |
| CUGUAGA | 1 |
| CUCCAGA | 1 |
| CUGUCAC | 1 |
| UUGCCAA | 1 |
| UG(OMG)GGC(OMG) | 1 |
| GCUCAAA | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- LSU P loop (9)
- (8)
- tRNA anticodon loop (4)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.05 | Avg 0.44 | Max 0.99
Coloring options: