HL_10QM_058

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

10QM|1|I|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10QM_058 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.2066

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

10QM|1|I|U|2404
10QM|1|I|G|2405
10QM|1|I|A|2406
10QM|1|I|A|2407
10QM|1|I|U|2408
10QM|1|I|G|2409
10QM|1|I|G|2410
10QM|1|I|A|2411
10QM|1|I|A|2412
10QM|1|I|G|2413

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein uL15