HL_10QM_065

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

10QM|1|I|G|2751, 10QM|1|I|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10QM_065 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.2542

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.4

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

12

Unit IDs

10QM|1|I|C|2745
10QM|1|I|U|2746
10QM|1|I|G|2747
10QM|1|I|A|2748
10QM|1|I|A|2749
10QM|1|I|A|2750
10QM|1|I|G|2751
10QM|1|I|C|2752
10QM|1|I|A|2753
10QM|1|I|U|2754
10QM|1|I|C|2755
10QM|1|I|U|2756
10QM|1|I|A|2757
10QM|1|I|A|2758
10QM|1|I|G|2759

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL6

Chain R

Large ribosomal subunit protein uL13

Chain m

50S ribosomal protein L36