HL_10QM_069

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

ACCCCAUGCCGAACU

Length

15 nucleotides

Bulged bases

10QM|1|J|G|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_10QM_069 not in the Motif Atlas

Geometric match to HL_8B0X_102

Geometric discrepancy: 0.1509

The information below is about HL_8B0X_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.4

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

10QM|1|J|A|34
10QM|1|J|C|35
10QM|1|J|C|36
10QM|1|J|C|37
10QM|1|J|C|38
10QM|1|J|A|39
10QM|1|J|U|40
10QM|1|J|G|41
10QM|1|J|C|42
10QM|1|J|C|43
10QM|1|J|G|44
10QM|1|J|A|45
10QM|1|J|A|46
10QM|1|J|C|47
10QM|1|J|U|48

Current chains

Chain J

5S ribosomal RNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA

Chain N

Large ribosomal subunit protein uL5

Chain W

Large ribosomal subunit protein uL18