HL_11BQ_040

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

11BQ|1|a|G|329, 11BQ|1|a|A|330, 11BQ|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11BQ_040 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3666

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

11BQ|1|a|G|327
11BQ|1|a|U|328
11BQ|1|a|G|329
11BQ|1|a|A|330
11BQ|1|a|C|331
11BQ|1|a|A|332
11BQ|1|a|G|333
11BQ|1|a|C|334
11BQ|1|a|C|335

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

50S ribosomal protein L24