HL_11BQ_059

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

11BQ|1|a|U|1325, 11BQ|1|a|U|1326, 11BQ|1|a|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11BQ_059 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.2008

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

11BQ|1|a|G|1324
11BQ|1|a|U|1325
11BQ|1|a|U|1326
11BQ|1|a|A|1327
11BQ|1|a|A|1328
11BQ|1|a|U|1329
11BQ|1|a|C|1330

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22