HL_11BQ_066

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

11BQ|1|a|A|1614, 11BQ|1|a|A|1616, 11BQ|1|a|6MZ|1618

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_11BQ_066 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.0988

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

11BQ|1|a|C|1612
11BQ|1|a|G|1613
11BQ|1|a|A|1614
11BQ|1|a|C|1615
11BQ|1|a|A|1616
11BQ|1|a|C|1617
11BQ|1|a|6MZ|1618
11BQ|1|a|G|1619

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain r

Large ribosomal subunit protein uL22