Motif HL_28592.5 Version HL_28592.5 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1S03_001 | 1S03 | 0.6636 | 3 | A | 47-MER | A | 22 | G | 23 | A | 26 | A | 27 | U | 29 | cWW |
| 2 | HL_4V9F_042 | 4V9F | 0.2549 | 3 | 0 | LSU rRNA | C | 1687 | G | 1688 | C | 1690 | C | 1692 | G | 1694 | cWW |
| 3 | HL_9E6Q_040 | 9E6Q | 0.2388 | 3 | 1 | LSU rRNA | C | 1754 | G | 1755 | C | 1757 | C | 1759 | G | 1761 | cWW |
| 4 | HL_9DFE_038 | 9DFE | 0.2929 | 3 | 1A | LSU rRNA | C | 1612 | G | 1613 | C | 1615 | C | 1617 | G | 1619 | cWW |
| 5 | HL_4WF9_038 | 4WF9 | 0.2766 | 3 | X | LSU rRNA | C | 1656 | G | 1657 | C | 1659 | C | 1661 | G | 1663 | cWW |
| 6 | HL_8B0X_068 | 8B0X | 0.2836 | 3 | a | LSU rRNA | C | 1614 | G | 1615 | C | 1617 | C | 1619 | G | 1621 | cWW |
| 7 | HL_7A0S_040 | 7A0S | 0.2564 | 3 | X | LSU rRNA | C | 1628 | G | 1629 | C | 1631 | C | 1633 | G | 1635 | cWW |
| 8 | HL_8GLP_045 | 8GLP | 0.0757 | 3 | L5 | LSU rRNA | C | 2792 | G | 2793 | A | 2795 | C | 2797 | G | 2799 | cWW |
| 9 | HL_9PN5_040 | 9PN5 | 0.0685 | 3 | A1 | LSU rRNA | C | 1844 | G | 1845 | A | 1847 | C | 1849 | G | 1851 | cWW |
| 10 | HL_9AXU_038 | 9AXU | 0.0660 | 3 | 2 | LSU rRNA | C | 1899 | G | 1900 | A | 1902 | C | 1904 | G | 1906 | cWW |
| 11 | HL_9H3G_045 | 9H3G | 0.0399 | 3 | A | LSU rRNA | C | 1846 | G | 1847 | A | 1849 | C | 1851 | OMG | 1853 | cWW |
| 12 | HL_9SUM_037 | 9SUM | 0.0000 | 3 | A | LSU rRNA | C | 1786 | G | 1787 | A | 1789 | C | 1791 | G | 1793 | cWW |
| 13 | HL_8OI5_037 | 8OI5 | 0.0681 | 3 | 1 | LSU rRNA | C | 1840 | G | 1841 | A | 1843 | C | 1845 | G | 1847 | cWW |
| 14 | HL_1L2X_001 | 1L2X | 0.5619 | 3 | A | RNA pseudoknot | G | 7 | C | 8 | C | 10 | C | 11 | C | 14 |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCAGCAG | 5 |
| CGACACAG | 4 |
| AGGCAAUU | 1 |
| CGACGCAG | 1 |
| CGACACG | 1 |
| CG(OMC)AUCA(OMG) | 1 |
| GCACCGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCAGCA | 5 |
| GACACA | 4 |
| GGCAAU | 1 |
| GACGCA | 1 |
| GACAC(6MZ) | 1 |
| G(OMC)AUCA | 1 |
| CACCGU | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (14)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.04 | Avg 0.29 | Max 0.75
Coloring options: